Detailed information NTG0586415

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: EGK58_RS06190
• Genome accession: NZ_CP078027
• Coordinates: 1293567..1294193 (+)
• Length: 208 a.a.
• NCBI ID: WP_004783995.1
• Uniprot ID: N8WPE0
• Organism: Acinetobacter variabilis strain AV_175
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1288567..1299193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGK58_RS06155 (EGK58_006155)	kdsB	1288867..1289628 (+)	762	WP_104425952.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EGK58_RS06160 (EGK58_006160)	-	1289643..1290623 (+)	981	WP_125279029.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
EGK58_RS06165 (EGK58_006165)	-	1290641..1290982 (+)	342	WP_004784000.1	PilZ domain-containing protein	-
EGK58_RS06170 (EGK58_006170)	-	1291010..1291783 (+)	774	WP_125279028.1	TatD family hydrolase	-
EGK58_RS06175 (EGK58_006175)	-	1291824..1292438 (+)	615	WP_125279027.1	TetR/AcrR family transcriptional regulator	-
EGK58_RS06180 (EGK58_006180)	-	1292448..1292996 (+)	549	WP_125279026.1	type II secretion system protein	-
EGK58_RS06185 (EGK58_006185)	gspI	1292986..1293570 (+)	585	WP_171431255.1	type II secretion system minor pseudopilin GspI	-
EGK58_RS06190 (EGK58_006190)	xcpW	1293567..1294193 (+)	627	WP_004783995.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EGK58_RS06195 (EGK58_006195)	gspK	1294208..1295179 (+)	972	WP_125279025.1	type II secretion system minor pseudopilin GspK	-
EGK58_RS06200 (EGK58_006200)	-	1295340..1295936 (+)	597	WP_125279024.1	6-pyruvoyl trahydropterin synthase family protein	-
EGK58_RS06205 (EGK58_006205)	ung	1295982..1296695 (+)	714	WP_125279023.1	uracil-DNA glycosylase	-
EGK58_RS06210 (EGK58_006210)	-	1296692..1297813 (+)	1122	WP_125279022.1	enoyl-CoA hydratase/isomerase family protein	-
EGK58_RS06215 (EGK58_006215)	tadA	1297820..1298335 (+)	516	WP_125279021.1	tRNA adenosine(34) deaminase TadA	-
EGK58_RS06220 (EGK58_006220)	-	1298398..1298832 (+)	435	WP_004783989.1	SRPBCC family protein	-

Sequence

Protein

• Length: 208 a.a.
• Molecular weight: 23940.22 Da
• Isoelectric Point: 4.7542

>NTDB_id=586415 EGK58_RS06190 WP_004783995.1 1293567..1294193(+) (xcpW) [Acinetobacter variabilis strain AV_175]
MKSKGFTLVELLVAIAIFAVLSALGWKVFDYIIQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSDVEQFQIVVLNPNEMTQWPD
SSFDLNQVEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide

• Length: 627 bp

>NTDB_id=586415 EGK58_RS06190 WP_004783995.1 1293567..1294193(+) (xcpW) [Acinetobacter variabilis strain AV_175]
ATGAAGTCAAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTGTCTGCTCTAGGCTGGAA
AGTATTTGATTATATTATACAAACCAAAGACCGTAATGCGGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTACAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGTCGTTTTAACTTTAGTAAGACTGGAGTTACCGATCCTCTGGAAGAGGGAATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTATATCGCTTGAAATACCGGAATTTAAACCAGACCGGTCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGATGTTGAGCAGTTTCAGATCGTAGTGCTTAATCCGAATGAAATGACCCAATGGCCAGAC
TCATCATTTGATTTAAATCAGGTTGAGCAAAAACAGCGCTTGCCCAAAGGCATTAAAATCAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (2-24)

• Type II secretion system (T2SS), protein J (T2SSJ) (58-187)

3D structure

• AlphaFold DB: N8WPE0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	60.199	96.635	0.582