Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KV238_RS07365 Genome accession   NZ_CP078012
Coordinates   1529148..1530026 (+) Length   292 a.a.
NCBI ID   WP_230923472.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1524148..1535026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS07335 (KV238_07330) - 1524341..1525216 (+) 876 WP_012678111.1 F0F1 ATP synthase subunit gamma -
  KV238_RS07340 (KV238_07335) atpD 1525384..1526790 (+) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  KV238_RS07345 (KV238_07340) - 1526803..1527219 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  KV238_RS07350 (KV238_07345) - 1527353..1527589 (+) 237 WP_043025653.1 DUF1146 family protein -
  KV238_RS07355 (KV238_07350) murA 1527653..1528924 (+) 1272 WP_230923470.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KV238_RS07360 (KV238_07355) - 1528928..1529116 (+) 189 WP_230923471.1 DNA-directed RNA polymerase subunit beta -
  KV238_RS07365 (KV238_07360) endA 1529148..1530026 (+) 879 WP_230923472.1 DNA/RNA non-specific endonuclease Machinery gene
  KV238_RS07370 (KV238_07365) - 1530040..1530198 (+) 159 WP_165622556.1 hypothetical protein -
  KV238_RS07375 (KV238_07370) pheS 1530942..1531985 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  KV238_RS07380 (KV238_07375) pheT 1532175..1534580 (+) 2406 WP_230923473.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31930.97 Da        Isoelectric Point: 10.2445

>NTDB_id=586271 KV238_RS07365 WP_230923472.1 1529148..1530026(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGRSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYDGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=586271 KV238_RS07365 WP_230923472.1 1529148..1530026(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATCATTAACCATAATAAAACAACGCTAAATGCAAAGGT
AGCCAGTCTGCCCTATGCCAATAATAAAACAAAACTGGTACAAGGGCGAAGTGTTCCTACCGTAGCCAACGCCCTGCTAA
CCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAAGGATTAAAGGGAAGATACAGTCACGCAGTAGATAGAGGACACCTCCTGGGCTATGCACTTGTTGGTGGGCTAAA
GGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGCGAT
CAACTGGACAAAACTATTATGAAACAAAGATTCGCAGAGCCCTAGATAGCAACAAGCGTGTCCGCTATCGTGTAACCCTA
CTTTATGATGGAAATAACCTCTTAGCAAGCGGCAGTCACCTTGAGGCAAAGTCATCAGACGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTGCAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGCATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524