Detailed information NTG0586259

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: KV238_RS04875
• Genome accession: NZ_CP078012
• Coordinates: 981440..982375 (+)
• Length: 311 a.a.
• NCBI ID: WP_021320349.1
• Uniprot ID: A0A922NTU6
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ_18-036
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 976440..987375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KV238_RS04855 (KV238_04855)	-	976601..978259 (+)	1659	WP_230923912.1	peptide ABC transporter substrate-binding protein	-
KV238_RS04860 (KV238_04860)	-	978426..979340 (+)	915	WP_043040049.1	ABC transporter permease	-
KV238_RS04865 (KV238_04865)	-	979350..980381 (+)	1032	WP_043030443.1	ABC transporter permease	-
KV238_RS04870 (KV238_04870)	oppD	980394..981440 (+)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
KV238_RS04875 (KV238_04875)	amiF	981440..982375 (+)	936	WP_021320349.1	ABC transporter ATP-binding protein	Regulator
KV238_RS04880 (KV238_04880)	rnjA	982994..984676 (-)	1683	WP_012514941.1	ribonuclease J1	-
KV238_RS04885 (KV238_04885)	-	984678..984908 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
KV238_RS04890 (KV238_04890)	tsaB	985194..985892 (+)	699	WP_043029338.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
KV238_RS04895 (KV238_04895)	rimI	985895..986320 (+)	426	WP_230923913.1	ribosomal protein S18-alanine N-acetyltransferase	-
KV238_RS04900 (KV238_04900)	tsaD	986310..987326 (+)	1017	WP_230923914.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35013.13 Da
• Isoelectric Point: 8.3807

>NTDB_id=586259 KV238_RS04875 WP_021320349.1 981440..982375(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=586259 KV238_RS04875 WP_021320349.1 981440..982375(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACATGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCAGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCGGATCAGTACCGCGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.248	98.392	0.534
amiF	Streptococcus thermophilus LMG 18311	53.922	98.392	0.531
amiF	Streptococcus salivarius strain HSISS4	53.595	98.392	0.527