Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M0D10_RS23365 Genome accession   NZ_CP096207
Coordinates   4970632..4971357 (+) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa TBCF10839     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4965632..4976357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS23335 (M0D10_23280) - 4965752..4966630 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  M0D10_RS23340 (M0D10_23285) - 4966632..4968008 (-) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  M0D10_RS23345 (M0D10_23290) - 4968019..4968267 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  M0D10_RS23350 (M0D10_23295) - 4968344..4969102 (-) 759 WP_042853554.1 5-oxoprolinase subunit PxpA -
  M0D10_RS23355 (M0D10_23300) - 4969220..4970146 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  M0D10_RS23360 (M0D10_23305) - 4970200..4970493 (+) 294 WP_003113255.1 hypothetical protein -
  M0D10_RS23365 (M0D10_23310) comF 4970632..4971357 (+) 726 WP_003103309.1 ComF family protein Machinery gene
  M0D10_RS23370 (M0D10_23315) - 4971399..4971719 (+) 321 WP_057386184.1 YfiM family lipoprotein -
  M0D10_RS23375 (M0D10_23320) - 4971787..4972545 (+) 759 WP_057386183.1 TOBE domain-containing protein -
  M0D10_RS23380 (M0D10_23325) - 4972607..4973581 (+) 975 WP_057386182.1 serine/threonine protein kinase -
  M0D10_RS23385 (M0D10_23330) rarD 4973784..4974680 (+) 897 WP_003103301.1 EamA family transporter RarD -
  M0D10_RS23390 (M0D10_23335) - 4975370..4975885 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=586156 M0D10_RS23365 WP_003103309.1 4970632..4971357(+) (comF) [Pseudomonas aeruginosa TBCF10839]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=586156 M0D10_RS23365 WP_003103309.1 4970632..4971357(+) (comF) [Pseudomonas aeruginosa TBCF10839]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGTTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382