Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MZN68_RS04160 Genome accession   NZ_CP096117
Coordinates   843989..844606 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DFS-1910310016     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 838989..849606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN68_RS04145 (MZN68_04105) - 840177..841805 (-) 1629 WP_002224512.1 ABC-F family ATPase -
  MZN68_RS04150 (MZN68_04110) - 841955..842329 (+) 375 WP_002220962.1 arsenate reductase -
  MZN68_RS04155 (MZN68_04115) - 842384..843922 (+) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  MZN68_RS04160 (MZN68_04120) recR 843989..844606 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  MZN68_RS04165 (MZN68_04125) - 844692..844970 (-) 279 WP_002220967.1 hypothetical protein -
  MZN68_RS04170 (MZN68_04130) - 845175..846422 (+) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  MZN68_RS04175 (MZN68_04135) lolD 846415..847110 (+) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MZN68_RS04180 (MZN68_04140) recD 847178..848923 (+) 1746 WP_002220971.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=586050 MZN68_RS04160 WP_002217147.1 843989..844606(+) (recR) [Neisseria meningitidis strain DFS-1910310016]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=586050 MZN68_RS04160 WP_002217147.1 843989..844606(+) (recR) [Neisseria meningitidis strain DFS-1910310016]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366