Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KVP03_RS08405 Genome accession   NZ_CP077959
Coordinates   1775021..1775899 (-) Length   292 a.a.
NCBI ID   WP_014622727.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1770021..1780899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS08390 (KVP03_08370) pheT 1770467..1772872 (-) 2406 WP_230923039.1 phenylalanine--tRNA ligase subunit beta -
  KVP03_RS08395 (KVP03_08375) pheS 1773062..1774105 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  KVP03_RS08400 (KVP03_08380) - 1774849..1775007 (-) 159 WP_014622728.1 hypothetical protein -
  KVP03_RS08405 (KVP03_08385) endA 1775021..1775899 (-) 879 WP_014622727.1 DNA/RNA non-specific endonuclease Machinery gene
  KVP03_RS08410 (KVP03_08390) - 1775931..1776119 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  KVP03_RS08415 (KVP03_08395) murA 1776123..1777394 (-) 1272 WP_043052969.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KVP03_RS08420 (KVP03_08400) - 1777458..1777694 (-) 237 WP_012678109.1 DUF1146 family protein -
  KVP03_RS08425 (KVP03_08405) - 1777828..1778244 (-) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  KVP03_RS08430 (KVP03_08410) atpD 1778257..1779663 (-) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  KVP03_RS08435 (KVP03_08415) - 1779831..1780706 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31840.94 Da        Isoelectric Point: 10.2312

>NTDB_id=585670 KVP03_RS08405 WP_014622727.1 1775021..1775899(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=585670 KVP03_RS08405 WP_014622727.1 1775021..1775899(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524