Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   KU502_RS12810 Genome accession   NZ_CP077916
Coordinates   2616578..2617648 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 281     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611578..2622648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU502_RS12770 (KU502_12815) gcvPA 2611755..2613101 (-) 1347 WP_000019692.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KU502_RS12775 (KU502_12820) gcvT 2613121..2614212 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KU502_RS12780 (KU502_12825) - 2614371..2614895 (-) 525 WP_001015120.1 shikimate kinase -
  KU502_RS12785 (KU502_12830) - 2614885..2615031 (-) 147 WP_001792109.1 hypothetical protein -
  KU502_RS12790 (KU502_12835) comGF 2615128..2615625 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU502_RS12795 (KU502_12840) comGE 2615543..2615842 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  KU502_RS12800 (KU502_12845) comGD 2615829..2616275 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU502_RS12805 (KU502_12850) comGC 2616253..2616564 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU502_RS12810 (KU502_12855) comGB 2616578..2617648 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU502_RS12815 (KU502_12860) comGA 2617620..2618594 (-) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  KU502_RS12820 (KU502_12865) - 2618646..2619269 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KU502_RS12825 (KU502_12870) - 2619266..2619595 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU502_RS12830 (KU502_12875) - 2619595..2620581 (-) 987 WP_225806189.1 ROK family glucokinase -
  KU502_RS12835 (KU502_12880) - 2620578..2620781 (-) 204 WP_064626802.1 YqgQ family protein -
  KU502_RS12840 (KU502_12885) - 2620762..2622225 (-) 1464 WP_001017865.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=585010 KU502_RS12810 WP_000776422.1 2616578..2617648(-) (comGB) [Staphylococcus aureus strain 281]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=585010 KU502_RS12810 WP_000776422.1 2616578..2617648(-) (comGB) [Staphylococcus aureus strain 281]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATAAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGGGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1