Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MX625_RS04275 Genome accession   NZ_CP095774
Coordinates   915084..915509 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 34Pae8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 910084..920509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX625_RS04255 ileS 910241..913072 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  MX625_RS04260 lspA 913065..913574 (+) 510 WP_003094728.1 signal peptidase II -
  MX625_RS04265 fkpB 913567..914007 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MX625_RS04270 ispH 914093..915037 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MX625_RS04275 comF 915084..915509 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  MX625_RS04280 pilY2 915506..915853 (-) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  MX625_RS04285 pilY1 915855..919346 (-) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  MX625_RS04290 pilX 919358..919945 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=584419 MX625_RS04275 WP_003094721.1 915084..915509(-) (comF) [Pseudomonas aeruginosa strain 34Pae8]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=584419 MX625_RS04275 WP_003094721.1 915084..915509(-) (comF) [Pseudomonas aeruginosa strain 34Pae8]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383