Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   B1NLA3E_RS17140 Genome accession   NC_021171
Coordinates   3574552..3576918 (-) Length   788 a.a.
NCBI ID   WP_041580640.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3569552..3581918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS17125 (B1NLA3E_16505) dtd 3571096..3571536 (-) 441 WP_015595094.1 D-aminoacyl-tRNA deacylase -
  B1NLA3E_RS17130 (B1NLA3E_16510) - 3571548..3573743 (-) 2196 WP_015595095.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  B1NLA3E_RS17135 (B1NLA3E_16515) - 3574049..3574561 (-) 513 WP_015595096.1 adenine phosphoribosyltransferase -
  B1NLA3E_RS17140 (B1NLA3E_16520) recJ 3574552..3576918 (-) 2367 WP_041580640.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  B1NLA3E_RS17145 (B1NLA3E_16525) secDF 3577031..3579298 (-) 2268 WP_015595098.1 protein translocase subunit SecDF -
  B1NLA3E_RS17150 (B1NLA3E_16530) - 3579428..3579724 (-) 297 WP_015595099.1 post-transcriptional regulator -
  B1NLA3E_RS17155 (B1NLA3E_16535) spoVB 3579853..3581415 (+) 1563 WP_015595100.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88608.50 Da        Isoelectric Point: 5.4685

>NTDB_id=58405 B1NLA3E_RS17140 WP_041580640.1 3574552..3576918(-) (recJ) [Bacillus sp. 1NLA3E]
MLKSKTRWKVRQSNQEKIQALKTELKISPLVASLLVNRGFETVADAHNFLFTNDQSFHDPFLMKDMEKAVARIHKAIDLQ
EQIFIFGDYDADGVSSTAIMMKILQELGAKVQFYIPNRFTEGYGPNEPAFRYAAENGVSLIITVDTGIAAIHEANVAKEL
GMDLIITDHHEPGPELPSAFAIIHPKLEDSTYPFRELAGVGVAFKLAHALYGKLPEHLLDIAVIGTIADLVSLTGENRLI
ATRGLQKMKNTKCVGLQALFKKTGVNPSSINEETIGFSVAPRINAAGRLESADIAVDLLLTEDMNEANSIAEEMEELNKQ
RQAIVNKITEEALREVEEHFPITDNSVLVIGKQGWNAGVIGIVASKLVERFYRPTIILSFDEETGLAKGSARSIAGFDLF
KNLSTCKEILPHFGGHPMAAGMTLKLDDVAELRNRLNALAKQQLTEKDFIPVVNIDCSVDLTEIDLAVIQEMQMLSPYGV
DNPKPKVLLDRVGLSSIRKIGSEQNHLKVTLEKSSATLDGVGFGLGHLFEHISPNANLSVIGELAINEWNNIRKPQIFLS
DLAVYSWQLFDYRGVKKQQKNFDAIPADNRKWIVFHKDNLKLVPQDQQQDVLWIDSIEQARLAEIDQANLVLLDLPPSKE
MIEHLLLGKKPARIYCQFFKRDSDFFSTIPTRDHFKWFYAFLAKRGSFNMKQQGNDLAKHRGWTNETIEFMSQVFFELDF
VTINNGLISLQAQAKKRDLTESSTYQLKMAQYSLENDLLYSSFQQLKGWFDGVIQESVNNEEEILEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=58405 B1NLA3E_RS17140 WP_041580640.1 3574552..3576918(-) (recJ) [Bacillus sp. 1NLA3E]
ATGTTAAAATCAAAAACAAGATGGAAGGTTCGTCAGTCAAATCAAGAAAAAATCCAGGCATTGAAAACAGAACTTAAAAT
TTCTCCTCTTGTTGCATCATTACTCGTCAATCGAGGATTTGAAACGGTTGCAGATGCACATAATTTTTTATTTACGAATG
ACCAATCCTTTCACGACCCTTTTTTAATGAAAGATATGGAGAAGGCTGTCGCTAGAATTCATAAAGCCATAGATTTACAA
GAGCAAATATTCATATTCGGAGATTACGATGCTGATGGTGTCAGTAGTACAGCGATTATGATGAAGATTCTTCAGGAGCT
GGGGGCAAAGGTTCAATTCTATATTCCAAACCGTTTTACGGAAGGATATGGTCCGAATGAACCGGCTTTTCGTTATGCAG
CAGAAAATGGAGTTAGCTTGATCATTACCGTTGATACAGGGATCGCGGCCATTCATGAAGCTAATGTGGCTAAAGAACTT
GGGATGGACTTGATCATAACTGACCATCATGAGCCCGGACCGGAACTTCCGAGCGCATTCGCGATCATCCATCCAAAATT
AGAAGATAGCACATATCCATTTCGTGAATTAGCTGGTGTCGGTGTGGCCTTTAAGTTGGCACATGCACTATACGGAAAAT
TACCAGAGCATTTGCTCGATATCGCTGTAATTGGGACAATCGCTGACCTTGTCTCACTTACAGGAGAAAATCGCCTCATT
GCTACCCGTGGGCTTCAGAAAATGAAGAATACAAAATGCGTCGGTCTTCAAGCACTTTTTAAGAAAACAGGTGTTAACCC
GTCGAGTATAAATGAAGAGACAATCGGCTTTTCAGTTGCACCAAGAATAAATGCTGCGGGCCGTTTAGAAAGTGCCGATA
TCGCAGTTGATTTACTTTTAACAGAAGATATGAATGAGGCTAATAGTATTGCTGAGGAAATGGAAGAGCTCAATAAACAG
CGTCAAGCCATTGTTAATAAAATTACTGAAGAAGCGCTTCGAGAAGTAGAAGAACACTTCCCCATCACAGATAACTCGGT
ATTGGTCATTGGAAAACAAGGCTGGAACGCTGGTGTAATAGGAATCGTGGCTTCAAAGCTCGTGGAAAGGTTTTATCGTC
CAACGATTATTCTTAGTTTTGACGAAGAAACCGGCTTAGCAAAAGGATCGGCACGAAGTATCGCTGGATTTGATTTGTTT
AAAAATCTGTCAACATGCAAGGAGATTCTTCCTCATTTTGGCGGACATCCGATGGCAGCGGGAATGACACTAAAACTTGA
TGACGTTGCTGAGCTTCGGAATCGATTAAATGCTCTTGCCAAACAGCAACTGACAGAAAAAGATTTCATTCCAGTTGTAA
ACATTGATTGTTCCGTCGACTTAACTGAAATAGATTTAGCAGTCATTCAAGAAATGCAGATGCTATCGCCTTATGGTGTT
GACAATCCAAAACCAAAGGTTCTACTCGATCGTGTCGGGCTGTCTTCAATAAGAAAAATTGGTTCTGAACAAAACCATTT
GAAGGTTACTTTAGAAAAGTCTTCTGCCACACTTGATGGAGTTGGCTTTGGTCTTGGACATTTATTTGAACATATTTCTC
CCAATGCCAATTTATCCGTCATTGGTGAATTAGCAATAAACGAATGGAATAACATAAGAAAGCCACAAATCTTTCTGTCA
GATTTAGCTGTTTATTCTTGGCAGCTTTTTGATTATCGTGGGGTAAAAAAACAACAAAAGAATTTTGATGCAATTCCTGC
TGACAATCGAAAATGGATTGTTTTTCACAAAGACAATCTTAAACTCGTTCCACAGGATCAGCAACAGGATGTGTTATGGA
TTGATTCTATTGAACAAGCCCGATTAGCGGAAATTGATCAGGCAAATTTGGTATTGTTGGATTTGCCACCTTCAAAAGAA
ATGATTGAACATTTATTGTTAGGTAAAAAACCGGCACGGATTTATTGTCAGTTCTTCAAACGTGACAGTGATTTTTTCAG
TACGATTCCAACCCGGGACCACTTTAAGTGGTTTTACGCTTTTCTTGCAAAAAGAGGGTCTTTTAATATGAAGCAGCAAG
GTAATGATTTAGCAAAACATCGAGGTTGGACAAATGAAACAATCGAATTTATGTCACAGGTGTTTTTTGAATTGGACTTT
GTTACAATAAATAATGGACTCATTTCATTGCAGGCACAGGCAAAGAAACGGGATTTAACAGAATCAAGTACTTATCAGTT
AAAAATGGCACAATATTCTCTTGAAAATGATTTATTGTATTCTTCGTTTCAGCAGTTAAAAGGCTGGTTCGATGGAGTCA
TTCAAGAGTCGGTTAATAATGAGGAGGAAATACTAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.341

98.604

0.546

Multiple sequence alignment