Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B1NLA3E_RS06985 Genome accession   NC_021171
Coordinates   1427692..1428471 (+) Length   259 a.a.
NCBI ID   WP_015593136.1    Uniprot ID   N0AXB7
Organism   Bacillus sp. 1NLA3E     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422692..1433471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS06965 (B1NLA3E_06540) trmFO 1423321..1424625 (+) 1305 WP_015593132.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B1NLA3E_RS06970 (B1NLA3E_06545) xerC 1424687..1425592 (+) 906 WP_041580369.1 tyrosine recombinase XerC -
  B1NLA3E_RS06975 (B1NLA3E_06550) hslV 1425617..1426159 (+) 543 WP_015593134.1 ATP-dependent protease subunit HslV -
  B1NLA3E_RS06980 (B1NLA3E_06555) hslU 1426180..1427589 (+) 1410 WP_015593135.1 HslU--HslV peptidase ATPase subunit -
  B1NLA3E_RS06985 (B1NLA3E_06560) codY 1427692..1428471 (+) 780 WP_015593136.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B1NLA3E_RS06990 (B1NLA3E_06565) - 1428812..1429396 (+) 585 Protein_1346 transposase -
  B1NLA3E_RS06995 (B1NLA3E_06570) rpsB 1430022..1430720 (+) 699 WP_015593138.1 30S ribosomal protein S2 -
  B1NLA3E_RS07000 (B1NLA3E_06575) tsf 1430886..1431767 (+) 882 WP_015593139.1 translation elongation factor Ts -
  B1NLA3E_RS07005 (B1NLA3E_06580) pyrH 1431894..1432616 (+) 723 WP_015593140.1 UMP kinase -
  B1NLA3E_RS07010 (B1NLA3E_06585) frr 1432619..1433176 (+) 558 WP_015593141.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28912.24 Da        Isoelectric Point: 4.8179

>NTDB_id=58393 B1NLA3E_RS06985 WP_015593136.1 1427692..1428471(+) (codY) [Bacillus sp. 1NLA3E]
MDLLTKTRTINKMLQKAAGKPVNFKEMAEILRDVIEANVFVVSRRGKLLGFAIKQSIENERMKQMLEDRQFPEDYTKSLF
NIQETSSNIDVESEYTAFPVENKSLFNAGLTTIVPIIGGGERLGTLILSRLEEQFHDDDLILAEYGATVVGMEILHEKAD
EIEGEARSKAVVQMAISSLSYSELEAIEHIFEELNGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKSN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=58393 B1NLA3E_RS06985 WP_015593136.1 1427692..1428471(+) (codY) [Bacillus sp. 1NLA3E]
ATGGATTTATTGACAAAAACAAGAACGATCAACAAGATGCTACAAAAGGCTGCAGGAAAACCTGTTAACTTCAAAGAAAT
GGCTGAAATATTACGTGATGTAATTGAAGCGAACGTTTTCGTAGTAAGTCGCCGAGGTAAACTGTTAGGGTTTGCCATCA
AACAATCAATCGAAAATGAGCGTATGAAACAAATGTTAGAAGATCGTCAATTCCCAGAAGATTACACAAAGAGTTTGTTT
AACATTCAAGAAACTTCTTCAAATATTGACGTTGAAAGTGAATATACTGCCTTTCCAGTTGAAAATAAATCATTATTCAA
TGCCGGCTTAACAACAATTGTACCGATCATCGGTGGTGGTGAACGTTTAGGAACGCTTATTTTATCCCGTTTAGAAGAGC
AGTTTCATGACGATGACTTGATCTTAGCTGAGTACGGAGCAACTGTAGTAGGAATGGAAATTCTTCATGAAAAAGCAGAC
GAGATCGAAGGAGAAGCAAGAAGTAAAGCTGTTGTTCAAATGGCGATTAGTTCATTATCTTACAGTGAGCTTGAAGCGAT
TGAACATATTTTTGAAGAACTTAACGGAAATGAAGGCTTACTTGTCGCTTCAAAGATTGCTGACCGCGTCGGAATTACCC
GTTCAGTCATTGTTAATGCACTTCGCAAACTAGAAAGTGCTGGAGTAATTGAGTCACGTTCACTTGGGATGAAAGGAACT
TATATTAAAGTTCTTAATGATAAATTTCTTGTTGAACTTGAAAAATTAAAATCTAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0AXB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

86.1

100

0.861
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.559

95.367

0.444

Multiple sequence alignment