Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MU520_RS09050 Genome accession   NZ_CP095463
Coordinates   1860906..1863395 (+) Length   829 a.a.
NCBI ID   WP_012774926.1    Uniprot ID   A0A0H3MT04
Organism   Streptococcus suis strain TJS56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855906..1868395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU520_RS09030 - 1856688..1857719 (-) 1032 WP_011922597.1 LysM domain-containing protein -
  MU520_RS09035 - 1858068..1859051 (-) 984 WP_012774928.1 Gfo/Idh/MocA family oxidoreductase -
  MU520_RS09040 rnhC 1859136..1860026 (+) 891 WP_012774927.1 ribonuclease HIII -
  MU520_RS09045 lepB 1860036..1860665 (+) 630 WP_011921809.1 signal peptidase I -
  MU520_RS09050 recD/recD2/recDB 1860906..1863395 (+) 2490 WP_012774926.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MU520_RS10215 - 1863434..1865509 (-) 2076 Protein_1775 heavy metal translocating P-type ATPase -
  MU520_RS09075 - 1865686..1866495 (-) 810 WP_011921804.1 glucosamine-6-phosphate isomerase -
  MU520_RS09080 - 1866589..1867620 (-) 1032 WP_011921803.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93153.44 Da        Isoelectric Point: 4.5782

>NTDB_id=583048 MU520_RS09050 WP_012774926.1 1860906..1863395(+) (recD/recD2/recDB) [Streptococcus suis strain TJS56]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAA
IAELESISSLTYDNIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=583048 MU520_RS09050 WP_012774926.1 1860906..1863395(+) (recD/recD2/recDB) [Streptococcus suis strain TJS56]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATACAAACCTAACTCGCCTGATGGGAAAAAACGGCTTCAAGCCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATATCTTCTCTCACCTACGATAACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGGCCAGGGACTGGAAAAACAACGGTTATCAACGGCATTATCGCAGTCTATGCTATCTTGC
ATAAGATTGACCTGACGCGAAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAACCAGACGGATG
AATGAATTGACAGGGCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAGGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ATATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCCGAGCAATTGCCTTCTGTCAGCCCCGGTCAAGTACTTGCT
GACCTCTTGAAAATTGACAAGCTGCCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGACAGGGTGCTCTGCCTAGCGATTTTCGTGAGAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AGAATGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCAGGTATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACTATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTGCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATTTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTTCCTGCCAAGTACACCGACTCCAAGCAGGACGAA
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTCCCCATCACCCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGCAAGGAAAG
CCTGATTAAAAAAGACGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.891

92.039

0.376