Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MUY23_RS01325 Genome accession   NZ_CP095162
Coordinates   280730..281518 (+) Length   262 a.a.
NCBI ID   WP_002937605.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS75     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 275730..286518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS01305 - 276028..276987 (-) 960 WP_014636805.1 asparaginase -
  MUY23_RS01310 - 277057..278422 (+) 1366 Protein_235 Cof-type HAD-IIB family hydrolase -
  MUY23_RS01315 - 278438..278890 (-) 453 WP_004194294.1 universal stress protein -
  MUY23_RS01320 - 279045..280259 (+) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  MUY23_RS01325 codY 280730..281518 (+) 789 WP_002937605.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MUY23_RS01330 - 281520..282071 (+) 552 WP_024376330.1 isochorismatase family cysteine hydrolase -
  MUY23_RS01335 - 282354..283542 (+) 1189 Protein_240 IS110 family transposase -
  MUY23_RS01340 rplS 284100..284447 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  MUY23_RS01345 - 284633..285307 (+) 675 WP_012774968.1 hydrolase -
  MUY23_RS01350 gatC 285525..285827 (+) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29276.33 Da        Isoelectric Point: 4.6797

>NTDB_id=582719 MUY23_RS01325 WP_002937605.1 280730..281518(+) (codY) [Streptococcus suis strain TJS75]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELNAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=582719 MUY23_RS01325 WP_002937605.1 280730..281518(+) (codY) [Streptococcus suis strain TJS75]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGAATGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

51.626

93.893

0.485