Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KUF67_RS12530 Genome accession   NZ_CP077751
Coordinates   2715494..2716147 (-) Length   217 a.a.
NCBI ID   WP_058877503.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain 2008N07-201     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2710494..2721147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUF67_RS12500 (KUF67_12470) - 2710709..2711128 (-) 420 WP_024564901.1 thiol-disulfide oxidoreductase DCC family protein -
  KUF67_RS12505 (KUF67_12475) - 2711136..2711615 (-) 480 WP_024564900.1 heme-binding domain-containing protein -
  KUF67_RS12510 (KUF67_12480) der 2711843..2713153 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  KUF67_RS12515 (KUF67_12485) - 2713209..2713853 (+) 645 WP_058877501.1 4'-phosphopantetheinyl transferase superfamily protein -
  KUF67_RS12520 (KUF67_12490) - 2713874..2714728 (-) 855 WP_058877502.1 phospholipase -
  KUF67_RS12525 (KUF67_12495) upp 2714838..2715488 (+) 651 WP_009087924.1 uracil phosphoribosyltransferase -
  KUF67_RS12530 (KUF67_12500) comF 2715494..2716147 (-) 654 WP_058877503.1 ComF family protein Machinery gene
  KUF67_RS12535 (KUF67_12505) - 2716169..2717674 (-) 1506 WP_058877504.1 helix-turn-helix domain-containing protein -
  KUF67_RS12540 (KUF67_12510) aceB 2717753..2719318 (+) 1566 WP_058877505.1 malate synthase A -
  KUF67_RS12545 (KUF67_12515) aceA 2719357..2720631 (+) 1275 WP_009087914.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25318.29 Da        Isoelectric Point: 8.4771

>NTDB_id=582683 KUF67_RS12530 WP_058877503.1 2715494..2716147(-) (comF) [Elizabethkingia anophelis strain 2008N07-201]
MNFFTDILFPNRCLQCNHIIDGKDIICEECYDQVDFTHWESLQETLLQQKLSSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGNTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=582683 KUF67_RS12530 WP_058877503.1 2715494..2716147(-) (comF) [Elizabethkingia anophelis strain 2008N07-201]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGAATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACAGGAGACACTATTGCAACAGAAATTATCTTCTC
TTTTCCCTGTTGAAAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAATACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.837

99.078

0.484