Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LNL76_RS09095 Genome accession   NZ_CP095161
Coordinates   1818541..1818846 (+) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813541..1823846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS09060 tolB 1814344..1815651 (+) 1308 WP_110480069.1 Tol-Pal system beta propeller repeat protein TolB -
  LNL76_RS09065 pal 1815662..1816114 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  LNL76_RS09080 comN 1816652..1817173 (+) 522 WP_110480071.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LNL76_RS09085 comO 1817174..1817893 (+) 720 WP_110480073.1 type II secretion system protein J Machinery gene
  LNL76_RS09090 - 1817895..1818560 (+) 666 WP_110480075.1 DUF2572 family protein -
  LNL76_RS09095 comQ 1818541..1818846 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  LNL76_RS09100 recC 1818858..1822262 (+) 3405 WP_110480077.1 exodeoxyribonuclease V subunit gamma -
  LNL76_RS09105 - 1822300..1823118 (-) 819 WP_110480079.1 pyridoxal phosphatase -
  LNL76_RS09110 araD 1823146..1823829 (-) 684 WP_245148692.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=582675 LNL76_RS09095 WP_017806953.1 1818541..1818846(+) (comQ) [Avibacterium paragallinarum strain ZJ-C]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=582675 LNL76_RS09095 WP_017806953.1 1818541..1818846(+) (comQ) [Avibacterium paragallinarum strain ZJ-C]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396