Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KTT68_RS08010 Genome accession   NZ_CP077672
Coordinates   1596535..1597314 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SWUJ1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591535..1602314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS07990 trmFO 1592222..1593529 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KTT68_RS07995 xerC 1593599..1594516 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KTT68_RS08000 hslV 1594532..1595077 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KTT68_RS08005 hslU 1595094..1596497 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  KTT68_RS08010 codY 1596535..1597314 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KTT68_RS08015 flgB 1597668..1598057 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KTT68_RS08020 flgC 1598057..1598509 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  KTT68_RS08025 fliE 1598520..1598840 (+) 321 WP_045207408.1 flagellar hook-basal body complex protein FliE -
  KTT68_RS08030 fliF 1598883..1600493 (+) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  KTT68_RS08035 fliG 1600507..1601523 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KTT68_RS08040 fliH 1601516..1602271 (+) 756 WP_082998011.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=582072 KTT68_RS08010 WP_003154263.1 1596535..1597314(+) (codY) [Bacillus velezensis strain SWUJ1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=582072 KTT68_RS08010 WP_003154263.1 1596535..1597314(+) (codY) [Bacillus velezensis strain SWUJ1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471