Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MP619_RS10080 Genome accession   NZ_CP095081
Coordinates   2020184..2022637 (+) Length   817 a.a.
NCBI ID   WP_129556241.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015184..2027637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS10060 (MP619_10030) - 2017598..2018143 (-) 546 WP_129556239.1 CvpA family protein -
  MP619_RS10065 (MP619_10035) - 2018146..2018454 (-) 309 WP_003052702.1 hypothetical protein -
  MP619_RS10070 (MP619_10040) rnhC 2018611..2019519 (+) 909 WP_129556240.1 ribonuclease HIII -
  MP619_RS10075 (MP619_10045) lepB 2019531..2020124 (+) 594 WP_012767541.1 signal peptidase I -
  MP619_RS10080 (MP619_10050) recD/recD2/recDB 2020184..2022637 (+) 2454 WP_129556241.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MP619_RS10085 (MP619_10055) - 2022727..2023215 (+) 489 WP_129556242.1 hypothetical protein -
  MP619_RS10090 (MP619_10060) dinB 2023304..2024401 (-) 1098 WP_268227764.1 DNA polymerase IV -
  MP619_RS10095 (MP619_10065) pflB 2024610..2026937 (+) 2328 WP_129556243.1 formate C-acetyltransferase -
  MP619_RS10100 (MP619_10070) - 2027042..2027485 (+) 444 WP_129556244.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91410.31 Da        Isoelectric Point: 4.6190

>NTDB_id=581872 MP619_RS10080 WP_129556241.1 2020184..2022637(+) (recD/recD2/recDB) [Streptococcus dysgalactiae strain WJ001]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKTNRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLNQSFSHDTIQTTI
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEFAAFDYAIKNEG
DKRQTYLIERFQEQSNTVSSQPNHELKSKEQTSLFSNTATLEDDSQKSFSQSTNSNPTENSQSDNDDFRLTPENYSSINP
MIGLTESDIALFFQKKS

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=581872 MP619_RS10080 WP_129556241.1 2020184..2022637(+) (recD/recD2/recDB) [Streptococcus dysgalactiae strain WJ001]
ATGGAACACTTTTTTACCGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
CATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCCAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATCTCTGGTTTGTCCAAGA
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTCGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
GTTAGTCGAAGATCTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGTGACTCTC
CAAAACGTTTTCGTGCCGCCCTCCTGCACTGCCTCTTAGAAGAGTCCGTCAGTCGAGGAGACACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCCGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAATCAGTCATTTAGTCATGATACCATCCAAACAACCATC
CAAGCCGTTCAAGAAGACTTTGCTATCACCTATGACCAGGTGCAGCAAGAAGCCATTGCTAAGGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAATGGCGACAACGATTACCAAGCCATGGAAGATTATCT
GGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CTACAACTCAAGTAATTATTGTCGGAGATAGTGATCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCTCAAATCGCCTTGCAGAAAATCTTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTCCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAATCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATATACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTAACGTATCCTAGAAATGAATGGCTAAAATTAACCCTAGCCTATGCCATGAGCATTCATAAGTC
ACAAGGGAGCGAGTTTCAAGTTGTGATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTAATTTATA
CTGCTATCACCCGTTCTAAAAGTAAGTTGATTATGCTAGGTGAATTTGCAGCCTTTGATTATGCTATTAAAAATGAAGGG
GATAAGCGCCAAACCTACTTGATTGAACGCTTCCAAGAACAATCCAATACTGTTTCTTCCCAACCTAACCACGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAACCCTTGAGGACGACTCTCAAAAATCTTTCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGACGATTTTAGGTTAACGCCTGAGAATTATTCGAGTATCAATCCG
ATGATAGGGCTTACAGAGTCAGATATTGCCCTCTTTTTCCAGAAAAAATCCTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-522)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.553

92.044

0.392