Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D8S83_RS06555 Genome accession   NZ_AP018349
Coordinates   1319838..1320611 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain GN1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314838..1325611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS06535 trmFO 1315182..1316489 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  D8S83_RS06540 xerC 1316906..1317802 (+) 897 WP_001015613.1 tyrosine recombinase XerC -
  D8S83_RS06545 hslV 1317799..1318344 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  D8S83_RS06550 hslU 1318410..1319813 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  D8S83_RS06555 codY 1319838..1320611 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D8S83_RS06560 - 1320662..1320754 (+) 93 WP_031788481.1 hypothetical protein -
  D8S83_RS06565 rpsB 1320953..1321720 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  D8S83_RS06570 - 1321754..1321867 (+) 114 WP_001789890.1 hypothetical protein -
  D8S83_RS06575 tsf 1321902..1322783 (+) 882 WP_000201387.1 translation elongation factor Ts -
  D8S83_RS06580 pyrH 1322920..1323642 (+) 723 WP_000057330.1 UMP kinase -
  D8S83_RS06585 frr 1323661..1324215 (+) 555 WP_001280006.1 ribosome recycling factor -
  D8S83_RS06590 - 1324588..1325358 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=58165 D8S83_RS06555 WP_000055337.1 1319838..1320611(+) (codY) [Staphylococcus aureus strain GN1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=58165 D8S83_RS06555 WP_000055337.1 1319838..1320611(+) (codY) [Staphylococcus aureus strain GN1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATACGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment