Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JGX27_RS04375 Genome accession   NZ_CP077423
Coordinates   826523..827389 (+) Length   288 a.a.
NCBI ID   WP_009853913.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 821523..832389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS04345 (JGX27_04345) - 821799..822677 (+) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -
  JGX27_RS04350 (JGX27_04350) atpD 822744..824150 (+) 1407 WP_009853908.1 F0F1 ATP synthase subunit beta -
  JGX27_RS04355 (JGX27_04355) - 824163..824579 (+) 417 WP_009853909.1 F0F1 ATP synthase subunit epsilon -
  JGX27_RS04360 (JGX27_04360) - 824644..824880 (+) 237 WP_012961763.1 DUF1146 family protein -
  JGX27_RS04365 (JGX27_04365) murA 824943..826217 (+) 1275 WP_043878543.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JGX27_RS04370 (JGX27_04370) - 826220..826408 (+) 189 WP_009853912.1 DNA-directed RNA polymerase subunit beta -
  JGX27_RS04375 (JGX27_04375) endA 826523..827389 (+) 867 WP_009853913.1 DNA/RNA non-specific endonuclease Machinery gene
  JGX27_RS04380 (JGX27_04380) pheS 827676..828719 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  JGX27_RS04385 (JGX27_04385) - 828755..829279 (+) 525 WP_009853915.1 N-acetyltransferase -
  JGX27_RS04390 (JGX27_04390) pheT 829350..831755 (+) 2406 WP_009853916.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30797.82 Da        Isoelectric Point: 5.6772

>NTDB_id=581507 JGX27_RS04375 WP_009853913.1 826523..827389(+) (endA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MAKKSKLSKQTKSLLSLVILLVGIGTGWVTISDSNDPLNQVVSLITGDSSSEITSNQSSSDSATPTQALAETVLTDSVKE
QLGANIEWNGAGAYIINDNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWTPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFVPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=581507 JGX27_RS04375 WP_009853913.1 826523..827389(+) (endA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGCAAAGAAATCAAAATTGTCTAAACAGACAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGTATTGGTACTGG
TTGGGTGACGATATCAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGACTCCTCTTCTGAAATAA
CGTCAAATCAATCGAGTTCTGATTCAGCAACGCCAACACAAGCTTTGGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAGCAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATGATAATCAAACATCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACCGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGTCTTGGACGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTGAA
AGGCTTTGATGCGTCAACAAGCAACCCTGACAATGTGGCAACACAGACCGCGTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAGAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGACGGTGATAATCTCTTAGCAAGCGGAACACACTTGGAAGCCAAATCATCTGACGGTAGTCTAGAATTTAACGT
CTTTGTTCCAAATGTGCAAAGCGGACTGACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.935

86.111

0.576
  endA Streptococcus pneumoniae D39

66.935

86.111

0.576
  endA Streptococcus pneumoniae R6

66.935

86.111

0.576
  endA Streptococcus pneumoniae TIGR4

66.935

86.111

0.576