Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   STO1_RS08990 Genome accession   NZ_AP018338
Coordinates   1746758..1748524 (-) Length   588 a.a.
NCBI ID   WP_084943961.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741758..1753524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08975 (STO1_016950) - 1743426..1744226 (-) 801 WP_001000838.1 SDR family oxidoreductase -
  STO1_RS08980 (STO1_016960) - 1744410..1745759 (-) 1350 WP_000018239.1 glucose-6-phosphate isomerase -
  STO1_RS08985 (STO1_016970) - 1745931..1746620 (-) 690 WP_096422867.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  STO1_RS08990 (STO1_016980) rcrQ 1746758..1748524 (-) 1767 WP_084943961.1 ABC transporter ATP-binding protein Regulator
  STO1_RS08995 (STO1_016990) - 1748526..1750232 (-) 1707 WP_095726400.1 ABC transporter ATP-binding protein -
  STO1_RS09000 (STO1_017000) - 1750439..1751455 (+) 1017 WP_033585444.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  STO1_RS09005 (STO1_017010) galU 1751477..1752376 (+) 900 WP_000811028.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  STO1_RS09010 (STO1_017020) - 1752498..1753178 (-) 681 WP_096422869.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65225.29 Da        Isoelectric Point: 4.8861

>NTDB_id=58122 STO1_RS08990 WP_084943961.1 1746758..1748524(-) (rcrQ) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKTVRFFWNYFKVYKFSFVIVVLMVAVATIAQALFPVFSGQAVTELANLVLAYQNGTSELAWQSLSALMLNLALVVLALV
VSSLIYMTLMTRVIAESTNEMRKGLFGKLSRLTVSFFDRHQDGDILSHFTSDLDNILQAFNESLVQVMSNIALYIGLIFV
MFSRNVTLALITVASTPVAFLMLVFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQDDIVAGFVEQNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFAGSAVLLNDPSIETTTALGLIVMFTQFSQQYYQPIIQVAASWGSLQLAFTG
ADRIQEMFDAEEEIRPQNAPAFTELREGVEISHIDFSYVPDKPILKDVSISAPKGQMIAVVGPTGSGKTTIMNLINRFYD
VDAGSISFDGKDIRDYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAAAKATHIHEYIESLPDKYDTLIN
DDQSVFSTGQKQLISIARTLMTDPQVLILDEATSNVDTVTESKIQNAMEAIVAGRTSFVIAHRLKTILNADQIIVLKDGE
VIEQGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=58122 STO1_RS08990 WP_084943961.1 1746758..1748524(-) (rcrQ) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAACCGTTCGATTTTTCTGGAATTATTTTAAAGTTTACAAGTTCTCCTTTGTCATTGTGGTTCTGATGGTTGCAGT
TGCGACGATTGCCCAAGCCCTCTTTCCAGTTTTTTCAGGTCAAGCAGTGACGGAGCTCGCTAACCTAGTTCTGGCTTATC
AAAATGGAACTTCCGAACTAGCCTGGCAGAGTTTGTCAGCTCTGATGCTGAATTTAGCTCTGGTTGTTCTCGCCCTAGTG
GTATCCAGTTTGATTTACATGACCTTGATGACCCGTGTGATTGCTGAGTCAACAAATGAGATGCGTAAGGGCCTCTTTGG
CAAACTCTCTCGTTTGACGGTTTCTTTCTTTGACCGCCATCAGGATGGCGACATCCTTTCTCACTTCACGAGTGACTTGG
ATAACATCCTTCAAGCCTTCAATGAAAGCCTAGTTCAGGTCATGAGCAATATTGCTCTTTACATCGGTTTGATTTTTGTC
ATGTTTTCAAGAAATGTGACGCTAGCCCTGATAACAGTAGCCAGCACCCCAGTGGCCTTTCTCATGTTGGTTTTCATCGT
GAAGATGGCCCGCAAGTACACCAATCTCCAGCAAAAAGAGGTTGGGAAACTCAACGCCTACATGGATGAGAGTATTTCTG
GACAGAAAGCTGTTATCGTACAAGGAATTCAAGACGACATCGTAGCAGGCTTTGTGGAGCAAAATGAGCGCGTGCGCAAG
GCAACCTTTAAAGGGAGAATGTTCTCAGGCATCCTCTTTCCTGTTATGAATGGGATGAGCTTGGTCAATACGGCCATCGT
TATTTTTGCAGGTTCTGCGGTCTTGCTGAACGATCCAAGTATCGAAACAACGACAGCCCTAGGTTTGATCGTCATGTTTA
CCCAATTTTCTCAGCAGTACTACCAGCCGATTATCCAGGTGGCTGCGAGTTGGGGGAGCCTCCAGTTGGCCTTTACTGGG
GCGGATCGTATCCAAGAAATGTTCGATGCAGAAGAAGAGATTCGTCCGCAAAATGCGCCTGCCTTTACGGAATTGCGAGA
AGGTGTTGAAATCAGTCACATTGATTTCTCTTATGTGCCAGACAAGCCGATTTTAAAAGATGTTAGCATTTCAGCTCCTA
AGGGGCAGATGATAGCAGTTGTAGGCCCGACTGGTTCGGGGAAAACAACCATCATGAACCTCATCAATCGTTTCTACGAT
GTGGATGCAGGTAGCATTTCTTTTGATGGCAAAGACATTCGTGACTACGACTTGGACAGCCTGCGGAGCAAGGTCGGGAT
TGTCTTGCAGGATTCGGTCTTGTTTAGTGGAACGATTCGGGATAATATCCGCTTCGGTGTGCCAGATGCTAGTCAGGAGA
TGGTAGAAGCAGCTGCTAAGGCTACGCATATCCATGAATATATCGAAAGTCTACCAGATAAGTACGATACTCTGATTAAT
GATGACCAGAGCGTCTTCTCAACCGGTCAGAAGCAGTTGATTTCCATCGCTCGAACCTTAATGACGGATCCCCAGGTCTT
AATCTTGGATGAGGCAACATCAAACGTGGATACTGTAACAGAGAGCAAGATTCAAAATGCTATGGAGGCAATTGTGGCAG
GAAGAACGAGCTTTGTGATTGCCCATCGCTTGAAAACTATTCTCAATGCCGATCAGATTATTGTCCTTAAGGATGGTGAG
GTTATCGAACAAGGAAATCATCACGAATTACTCAAGCTTGGAGGCTTTTACTCCGAACTGTACCATAATCAATTTGTCTT
TGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-514)

ABC transporter transmembrane region (ABC_membrane)

(19-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.833

98.81

0.364

Multiple sequence alignment