Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L24_RS02195 Genome accession   NZ_CP077369
Coordinates   445049..445477 (-) Length   142 a.a.
NCBI ID   WP_216986368.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440049..450477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02165 (I6L24_02165) - 440648..441616 (+) 969 WP_216986366.1 esterase/lipase family protein -
  I6L24_RS02170 (I6L24_02170) - 441686..442664 (+) 979 Protein_410 esterase/lipase family protein -
  I6L24_RS02175 (I6L24_02175) rplS 442735..443109 (-) 375 WP_004281205.1 50S ribosomal protein L19 -
  I6L24_RS02180 (I6L24_02180) trmD 443295..444029 (-) 735 WP_216986367.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L24_RS02185 (I6L24_02185) rimM 444072..444620 (-) 549 WP_168418483.1 ribosome maturation factor RimM -
  I6L24_RS02190 (I6L24_02190) rpsP 444649..444906 (-) 258 WP_004809941.1 30S ribosomal protein S16 -
  I6L24_RS02195 (I6L24_02195) comF 445049..445477 (-) 429 WP_216986368.1 type IV pilin protein Machinery gene
  I6L24_RS02200 (I6L24_02200) - 445477..446070 (-) 594 WP_216986369.1 type IV pilin protein -
  I6L24_RS02205 (I6L24_02205) - 446081..449686 (-) 3606 WP_216986370.1 pilus assembly protein -
  I6L24_RS02210 (I6L24_02210) - 449703..450395 (-) 693 WP_216986371.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15640.84 Da        Isoelectric Point: 9.2256

>NTDB_id=580972 I6L24_RS02195 WP_216986368.1 445049..445477(-) (comF) [Acinetobacter lwoffii strain FDAARGOS 1394]
MKKYSLGFTLIELMIVVAIIAVLAAIAYPSYTQYKIRTNRADVQSEMMNIAQRLQSYYVINHNYTSATLDNGTTSKDYPI
SNPVYRVTLVPSGQTYTLTAEPISGTVQVGNGSVILDSQGRKCWTKTTTACVPSATSNWDGR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=580972 I6L24_RS02195 WP_216986368.1 445049..445477(-) (comF) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGAAAAAATACTCTTTAGGATTTACTTTAATTGAATTAATGATTGTTGTGGCAATAATTGCTGTTTTGGCGGCGATTGC
TTACCCTTCTTATACTCAATATAAAATTCGTACTAACCGTGCTGATGTACAAAGTGAAATGATGAATATTGCACAGCGCT
TACAAAGTTACTACGTGATCAATCATAATTACACGAGTGCAACCCTAGATAACGGCACAACCAGCAAAGATTATCCAATA
TCTAATCCTGTTTATAGAGTTACGCTTGTTCCGAGTGGTCAAACCTATACATTAACTGCAGAGCCTATATCCGGCACTGT
TCAGGTGGGTAATGGAAGTGTAATTTTAGATAGTCAGGGAAGGAAGTGTTGGACTAAAACAACTACAGCTTGCGTTCCCT
CAGCCACCTCCAACTGGGACGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.518

97.887

0.514
  pilE Acinetobacter baumannii D1279779

49.265

95.775

0.472