Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6L30_RS07895 Genome accession   NZ_CP077365
Coordinates   1676436..1676846 (-) Length   136 a.a.
NCBI ID   WP_174722532.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671436..1681846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS07865 (I6L30_07865) - 1671523..1671792 (-) 270 WP_025469051.1 HPr family phosphocarrier protein -
  I6L30_RS07870 (I6L30_07870) rapZ 1671789..1672640 (-) 852 WP_019458134.1 RNase adapter RapZ -
  I6L30_RS07875 (I6L30_07875) panC 1672663..1673511 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  I6L30_RS07880 (I6L30_07880) panB 1673515..1674324 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6L30_RS07885 (I6L30_07885) folK 1674368..1674850 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6L30_RS07890 (I6L30_07890) pcnB 1674847..1676310 (-) 1464 WP_151749928.1 polynucleotide adenylyltransferase PcnB -
  I6L30_RS07895 (I6L30_07895) comEA 1676436..1676846 (-) 411 WP_174722532.1 ComEA family DNA-binding protein Machinery gene
  I6L30_RS07900 (I6L30_07900) mazG 1676815..1677621 (-) 807 WP_151749929.1 nucleoside triphosphate pyrophosphohydrolase -
  I6L30_RS07905 (I6L30_07905) - 1677734..1678507 (+) 774 WP_174735311.1 SDR family oxidoreductase -
  I6L30_RS07910 (I6L30_07910) - 1678553..1680859 (-) 2307 WP_100191980.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15517.81 Da        Isoelectric Point: 10.4105

>NTDB_id=580916 I6L30_RS07895 WP_174722532.1 1676436..1676846(-) (comEA) [Acinetobacter seifertii strain FDAARGOS 1400]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNGSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=580916 I6L30_RS07895 WP_174722532.1 1676436..1676846(-) (comEA) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGGCTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGGCCTGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

86.029

100

0.86
  comEA Acinetobacter baylyi ADP1

49.091

80.882

0.397