Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L23_RS08575 Genome accession   NZ_CP077336
Coordinates   1847058..1847483 (+) Length   141 a.a.
NCBI ID   WP_004644984.1    Uniprot ID   N8Q795
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1842058..1852483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08560 (I6L23_08560) - 1842064..1842750 (+) 687 WP_004644981.1 pilus assembly PilX family protein -
  I6L23_RS08565 (I6L23_08565) - 1842768..1846355 (+) 3588 WP_004644982.1 hypothetical protein -
  I6L23_RS08570 (I6L23_08570) - 1846366..1847058 (+) 693 WP_004644983.1 type IV pilin protein -
  I6L23_RS08575 (I6L23_08575) comF 1847058..1847483 (+) 426 WP_004644984.1 type IV pilin protein Machinery gene
  I6L23_RS08580 (I6L23_08580) rpsP 1847685..1847942 (+) 258 WP_004281198.1 30S ribosomal protein S16 -
  I6L23_RS08585 (I6L23_08585) rimM 1847973..1848521 (+) 549 WP_004644985.1 ribosome maturation factor RimM -
  I6L23_RS08590 (I6L23_08590) trmD 1848549..1849283 (+) 735 WP_004644986.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L23_RS08595 (I6L23_08595) rplS 1849470..1849844 (+) 375 WP_004644987.1 50S ribosomal protein L19 -
  I6L23_RS08600 (I6L23_08600) - 1850357..1851325 (-) 969 WP_004644988.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15578.72 Da        Isoelectric Point: 8.9007

>NTDB_id=580870 I6L23_RS08575 WP_004644984.1 1847058..1847483(+) (comF) [Acinetobacter lwoffii strain FDAARGOS 1393]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQSEMMQIAQRLQSYYVINHNYTNARLDNGTVSKAYPA
SGSVYTITLAPLDQTWTLTAVPTPNTVQDGNGAVVLNSQGQKCWEKGTTCSVSTSSNWESR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=580870 I6L23_RS08575 WP_004644984.1 1847058..1847483(+) (comF) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAAAGTGAAATGATGCAAATAGCCCAACGGT
TACAGAGTTATTATGTCATCAATCATAATTATACCAACGCAAGATTGGACAATGGCACAGTGAGTAAAGCCTATCCTGCT
TCAGGAAGTGTATATACCATCACCCTTGCGCCACTCGATCAAACTTGGACGCTTACGGCAGTCCCAACCCCGAATACAGT
TCAAGATGGTAATGGAGCAGTGGTGCTAAATAGCCAAGGACAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTA
CTTCTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q795

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

55.396

98.582

0.546
  pilE Acinetobacter baumannii D1279779

52.941

96.454

0.511