Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   STO1_RS02725 Genome accession   NZ_AP018338
Coordinates   547410..548198 (+) Length   262 a.a.
NCBI ID   WP_000940727.1    Uniprot ID   A0A426FW22
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 542410..553198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS02710 (STO1_005320) murT 542443..543786 (-) 1344 WP_061588341.1 lipid II isoglutaminyl synthase subunit MurT -
  STO1_RS02715 (STO1_005330) - 543885..545201 (-) 1317 WP_096421860.1 FAD-containing oxidoreductase -
  STO1_RS02720 (STO1_005340) - 545551..547128 (+) 1578 WP_084939203.1 DEAD/DEAH box helicase -
  STO1_RS02725 (STO1_005350) codY 547410..548198 (+) 789 WP_000940727.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  STO1_RS02730 (STO1_005360) - 548198..548773 (+) 576 WP_061588339.1 cysteine hydrolase family protein -
  STO1_RS02740 (STO1_005370) - 549317..550594 (+) 1278 WP_096421862.1 ABC transporter permease -
  STO1_RS02745 (STO1_005380) vex2 550722..551369 (+) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  STO1_RS02750 (STO1_005390) vex3 551420..552799 (+) 1380 WP_061426954.1 ABC transporter permease subunit Vex3 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29671.03 Da        Isoelectric Point: 5.0834

>NTDB_id=58059 STO1_RS02725 WP_000940727.1 547410..548198(+) (codY) [Streptococcus oralis subsp. tigurinus strain osk_001]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYI
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=58059 STO1_RS02725 WP_000940727.1 547410..548198(+) (codY) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGGCACACTTATTAGAAAAAACAAGAAAAATTACTTCTATTTTGAAACGCTCAGAGGAGCAACTTCAAGATGAACTTCC
TTACAATGCGATTACACGCCAGTTGGCAGATATTATTGATTGTAACGCTTGTATTGTGAATAGCAAGGGACGCCTTTTAG
GCTACTTCATGCGTTATAAAACGAATACAGATCGTGTAGAGCAGTTTTTTCAAACTAAGATTTTTCCAGATGATTATATT
CAAGGTGCAAACATGATCTATGATACGGAAGCCAACCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTAGAGAGCCG
TGCAGATTTTCCAGATGGTTTGACGACCATTGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCGTTGATCATTTGGC
GCAATGATAAGAAATTTGAAGATGAAGATTTGATTCTTGTTGAGATTGCGAGCACGGTGGTAGGGATTCAACTGCTGAAC
TTCCAACGTGAAGAGGATGAGAAAAATATTCGCCGTCGTACTGCTGTTACCATGGCGGTTAATACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAGTTGGATGGAAATGAAGGGCAGCTGACTGCATCAGTTATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCGGCGGGAATTATTGAGAGTCGTTCATTAGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A426FW22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.977

100

0.63
  codY Bacillus subtilis subsp. subtilis str. 168

49.593

93.893

0.466