Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I6L85_RS06935 Genome accession   NZ_CP077248
Coordinates   1401596..1402435 (-) Length   279 a.a.
NCBI ID   WP_111723470.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1396596..1407435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS10600 - 1397321..1397428 (-) 108 Protein_1336 DNA-entry nuclease -
  I6L85_RS06915 (I6L85_06915) - 1397721..1398767 (+) 1047 WP_111723474.1 iron ABC transporter permease -
  I6L85_RS06920 (I6L85_06920) - 1398769..1399524 (+) 756 WP_111723473.1 ABC transporter ATP-binding protein -
  I6L85_RS06925 (I6L85_06925) - 1399669..1400697 (+) 1029 WP_111723472.1 ABC transporter substrate-binding protein -
  I6L85_RS06930 (I6L85_06930) - 1400678..1401379 (+) 702 WP_111723471.1 alpha/beta hydrolase-fold protein -
  I6L85_RS06935 (I6L85_06935) endA 1401596..1402435 (-) 840 WP_111723470.1 DNA/RNA non-specific endonuclease Machinery gene
  I6L85_RS06940 (I6L85_06940) - 1402480..1402668 (-) 189 WP_045502090.1 DNA-directed RNA polymerase subunit beta -
  I6L85_RS06945 (I6L85_06945) murA 1402661..1403941 (-) 1281 WP_012000226.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6L85_RS06950 (I6L85_06950) - 1403979..1404212 (-) 234 WP_037622338.1 DUF1146 family protein -
  I6L85_RS06955 (I6L85_06955) tpiA 1404342..1405100 (-) 759 WP_111723469.1 triose-phosphate isomerase -
  I6L85_RS06960 (I6L85_06960) tuf 1405374..1406570 (-) 1197 WP_020992675.1 elongation factor Tu -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30799.50 Da        Isoelectric Point: 10.1118

>NTDB_id=580281 I6L85_RS06935 WP_111723470.1 1401596..1402435(-) (endA) [Streptococcus gordonii strain FDAARGOS 1455]
MKKKQEEKLFQSIVGLILALVLIAGANYFSNHQNQDNIKSNPQVQRTGRRDISTPEQALSQSVLTDSVRKQLKGSIEWNQ
AGAFIINGNKTDLNADIASQPYAQNQTKSVQGQLVPIIGNALLSKQTRQYKNREETGNGTTSWVPAGWHQLRNLTGDFNH
AVDRGHLLAYSLVGGLKNFDASTSNPVNIAVQTAWANQANSSSSTGQNFYESLIRKALDKKKRVRYRVTLIYANPDDLIA
AGSHLEAKSSDGSLEFNVFVPNIQTGIRINYRTGEVTVE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=580281 I6L85_RS06935 WP_111723470.1 1401596..1402435(-) (endA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAAGAAGAAACAAGAAGAGAAACTCTTTCAAAGCATAGTAGGACTGATTCTGGCACTTGTTCTGATAGCTGGTGCTAA
TTATTTCTCAAACCATCAGAATCAGGATAACATAAAGTCTAATCCACAGGTTCAAAGAACAGGAAGAAGGGATATCTCAA
CTCCCGAGCAAGCACTATCTCAGAGTGTATTGACTGATTCTGTTCGTAAGCAATTAAAAGGTAGCATAGAATGGAATCAG
GCAGGTGCTTTTATTATTAATGGCAACAAGACAGACCTGAATGCTGATATTGCCAGTCAGCCTTATGCACAAAATCAAAC
GAAGTCAGTTCAGGGACAGTTAGTACCAATAATTGGGAATGCACTGCTTTCTAAACAGACTAGACAATACAAAAATCGAG
AAGAAACAGGAAACGGGACGACAAGTTGGGTTCCTGCCGGCTGGCATCAGTTGAGAAATCTTACTGGAGATTTTAATCAT
GCTGTTGATCGAGGGCATTTATTAGCATATTCTTTAGTCGGAGGCTTAAAGAACTTTGATGCTTCTACAAGTAACCCAGT
GAATATCGCTGTTCAAACAGCTTGGGCAAATCAGGCAAACAGTTCTTCGTCTACTGGACAAAATTTTTATGAAAGCTTGA
TTCGGAAGGCTTTGGATAAAAAGAAGCGAGTCCGTTATCGAGTTACCTTGATTTATGCTAATCCTGATGACTTAATAGCA
GCGGGCTCTCATTTAGAAGCAAAGTCTAGCGATGGAAGTCTTGAGTTTAATGTCTTCGTTCCAAATATTCAAACCGGGAT
TCGTATTAACTATAGAACTGGAGAAGTAACAGTAGAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.304

80.287

0.548
  endA Streptococcus pneumoniae D39

68.304

80.287

0.548
  endA Streptococcus pneumoniae R6

68.304

80.287

0.548
  endA Streptococcus pneumoniae TIGR4

68.304

80.287

0.548