Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPYKS030_RS09175 Genome accession   NZ_AP018337
Coordinates   1729488..1730756 (+) Length   422 a.a.
NCBI ID   WP_011055043.1    Uniprot ID   A0A0H2UWN9
Organism   Streptococcus pyogenes strain KS030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724488..1735756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYKS030_RS09150 (SPYKS030_17380) - 1724656..1725405 (-) 750 WP_011055039.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SPYKS030_RS09155 (SPYKS030_17390) prmA 1725405..1726358 (-) 954 WP_011055040.1 50S ribosomal protein L11 methyltransferase -
  SPYKS030_RS09160 (SPYKS030_17400) - 1726429..1726899 (-) 471 WP_002987990.1 DUF3013 family protein -
  SPYKS030_RS09165 (SPYKS030_17410) pabB 1727099..1728856 (+) 1758 WP_032461371.1 aminodeoxychorismate synthase component I -
  SPYKS030_RS09170 (SPYKS030_17420) - 1728889..1729455 (+) 567 WP_011055042.1 aminodeoxychorismate/anthranilate synthase component II -
  SPYKS030_RS09175 (SPYKS030_17430) rarA 1729488..1730756 (+) 1269 WP_011055043.1 replication-associated recombination protein A Machinery gene
  SPYKS030_RS09190 (SPYKS030_17440) - 1731324..1732015 (+) 692 Protein_1728 exotoxin beta-grasp domain-containing protein -
  SPYKS030_RS10350 (SPYKS030_17450) - 1732432..1732566 (-) 135 WP_011018269.1 hypothetical protein -
  SPYKS030_RS09195 (SPYKS030_17460) - 1732745..1734373 (+) 1629 WP_011055046.1 ABC transporter substrate-binding protein -
  SPYKS030_RS09200 (SPYKS030_17470) - 1734486..1735463 (+) 978 WP_032461372.1 ABC transporter permease -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46600.07 Da        Isoelectric Point: 6.5101

>NTDB_id=58002 SPYKS030_RS09175 WP_011055043.1 1729488..1730756(+) (rarA) [Streptococcus pyogenes strain KS030]
MPDHLALRMRPKTISEVIGQKHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=58002 SPYKS030_RS09175 WP_011055043.1 1729488..1730756(+) (rarA) [Streptococcus pyogenes strain KS030]
ATGCCTGATCACTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCCAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAAACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGACATTAT
GATGTGCTATCAGCCCTCCAAAAAGCTATTCGCGGCTCCGATGTCAATGCCAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCTCCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UWN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.233

98.815

0.585

Multiple sequence alignment