Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MUA13_RS06155 Genome accession   NZ_CP094787
Coordinates   1264238..1265011 (+) Length   257 a.a.
NCBI ID   WP_262522560.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6168     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259238..1270011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA13_RS06135 (MUA13_06130) trmFO 1259582..1260889 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  MUA13_RS06140 (MUA13_06135) xerC 1261306..1262202 (+) 897 WP_250755196.1 tyrosine recombinase XerC -
  MUA13_RS06145 (MUA13_06140) hslV 1262199..1262744 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  MUA13_RS06150 (MUA13_06145) hslU 1262810..1264213 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  MUA13_RS06155 (MUA13_06150) codY 1264238..1265011 (+) 774 WP_262522560.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MUA13_RS06160 (MUA13_06155) - 1265062..1265154 (+) 93 WP_031788481.1 hypothetical protein -
  MUA13_RS06165 (MUA13_06160) rpsB 1265353..1266120 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  MUA13_RS06170 (MUA13_06165) - 1266154..1266267 (+) 114 WP_252569786.1 hypothetical protein -
  MUA13_RS06175 (MUA13_06170) tsf 1266302..1267183 (+) 882 WP_000201387.1 translation elongation factor Ts -
  MUA13_RS06180 (MUA13_06175) pyrH 1267320..1268042 (+) 723 WP_000057330.1 UMP kinase -
  MUA13_RS06185 (MUA13_06180) frr 1268061..1268615 (+) 555 WP_001280006.1 ribosome recycling factor -
  MUA13_RS06190 (MUA13_06185) - 1268988..1269758 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.3668

>NTDB_id=579845 MUA13_RS06155 WP_262522560.1 1264238..1265011(+) (codY) [Staphylococcus aureus strain IVB6168]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDTLEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=579845 MUA13_RS06155 WP_262522560.1 1264238..1265011(+) (codY) [Staphylococcus aureus strain IVB6168]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATACATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428