Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MUA47_RS08135 Genome accession   NZ_CP094773
Coordinates   1693984..1695258 (+) Length   424 a.a.
NCBI ID   WP_000102742.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6195     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688984..1700258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA47_RS08105 (MUA47_08110) mnmA 1689186..1690304 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA47_RS08110 (MUA47_08115) - 1690305..1691447 (-) 1143 WP_000409172.1 cysteine desulfurase family protein -
  MUA47_RS08115 (MUA47_08120) - 1691759..1692772 (+) 1014 WP_046597531.1 LLM class flavin-dependent oxidoreductase -
  MUA47_RS08120 (MUA47_08125) - 1693009..1693155 (-) 147 WP_262634633.1 SAS049 family protein -
  MUA47_RS08125 (MUA47_08130) - 1693195..1693377 (-) 183 WP_000752912.1 CsbD family protein -
  MUA47_RS08130 (MUA47_08135) cymR 1693477..1693899 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  MUA47_RS08135 (MUA47_08140) rarA 1693984..1695258 (+) 1275 WP_000102742.1 replication-associated recombination protein A Machinery gene
  MUA47_RS08140 (MUA47_08145) - 1695419..1696192 (-) 774 WP_250425709.1 ThiF family adenylyltransferase -
  MUA47_RS08145 (MUA47_08150) - 1696192..1696320 (-) 129 WP_031901221.1 hypothetical protein -
  MUA47_RS08155 (MUA47_08160) aspS 1696653..1698419 (-) 1767 WP_000044798.1 aspartate--tRNA ligase -
  MUA47_RS08160 (MUA47_08165) hisS 1698435..1699697 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47237.81 Da        Isoelectric Point: 8.3539

>NTDB_id=579338 MUA47_RS08135 WP_000102742.1 1693984..1695258(+) (rarA) [Staphylococcus aureus strain IVB6195]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=579338 MUA47_RS08135 WP_000102742.1 1693984..1695258(+) (rarA) [Staphylococcus aureus strain IVB6195]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGGGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATCGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684