Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MUA94_RS07585 Genome accession   NZ_CP094768
Coordinates   1529455..1530228 (-) Length   257 a.a.
NCBI ID   WP_262536783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524455..1535228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS07550 (MUA94_07535) - 1524708..1525478 (-) 771 WP_000473705.1 isoprenyl transferase -
  MUA94_RS07555 (MUA94_07540) frr 1525851..1526405 (-) 555 WP_001280006.1 ribosome recycling factor -
  MUA94_RS07560 (MUA94_07545) pyrH 1526424..1527146 (-) 723 WP_000057330.1 UMP kinase -
  MUA94_RS07565 (MUA94_07550) tsf 1527283..1528164 (-) 882 WP_000201387.1 translation elongation factor Ts -
  MUA94_RS07570 (MUA94_07555) - 1528199..1528312 (-) 114 WP_001789890.1 hypothetical protein -
  MUA94_RS07575 (MUA94_07560) rpsB 1528346..1529113 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  MUA94_RS07580 (MUA94_07565) - 1529312..1529404 (-) 93 WP_031788481.1 hypothetical protein -
  MUA94_RS07585 (MUA94_07570) codY 1529455..1530228 (-) 774 WP_262536783.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MUA94_RS07590 (MUA94_07575) hslU 1530253..1531656 (-) 1404 WP_262538811.1 ATP-dependent protease ATPase subunit HslU -
  MUA94_RS07595 (MUA94_07580) hslV 1531722..1532267 (-) 546 WP_262536784.1 ATP-dependent protease subunit HslV -
  MUA94_RS07600 (MUA94_07585) xerC 1532264..1533160 (-) 897 WP_262536786.1 tyrosine recombinase XerC -
  MUA94_RS07605 (MUA94_07590) trmFO 1533577..1534884 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28729.09 Da        Isoelectric Point: 6.2606

>NTDB_id=579072 MUA94_RS07585 WP_262536783.1 1529455..1530228(-) (codY) [Staphylococcus aureus strain IVB6202]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEHTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=579072 MUA94_RS07585 WP_262536783.1 1529455..1530228(-) (codY) [Staphylococcus aureus strain IVB6202]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAACATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424