Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MUA94_RS05700 Genome accession   NZ_CP094768
Coordinates   1137410..1138684 (-) Length   424 a.a.
NCBI ID   WP_262538617.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132410..1143684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS05675 (MUA94_05665) hisS 1132971..1134233 (+) 1263 WP_262538610.1 histidine--tRNA ligase -
  MUA94_RS05680 (MUA94_05670) aspS 1134249..1136015 (+) 1767 WP_072491717.1 aspartate--tRNA ligase -
  MUA94_RS05690 (MUA94_05680) - 1136348..1136476 (+) 129 WP_041204300.1 hypothetical protein -
  MUA94_RS05695 (MUA94_05685) - 1136476..1137249 (+) 774 WP_262538615.1 tRNA threonylcarbamoyladenosine dehydratase -
  MUA94_RS05700 (MUA94_05690) rarA 1137410..1138684 (-) 1275 WP_262538617.1 replication-associated recombination protein A Machinery gene
  MUA94_RS05705 (MUA94_05695) cymR 1138769..1139191 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  MUA94_RS05710 (MUA94_05700) - 1139291..1139473 (+) 183 WP_000752912.1 CsbD family protein -
  MUA94_RS05715 (MUA94_05705) - 1139513..1139659 (+) 147 WP_000009238.1 SAS049 family protein -
  MUA94_RS05720 (MUA94_05710) - 1139896..1140909 (-) 1014 WP_115211263.1 LLM class flavin-dependent oxidoreductase -
  MUA94_RS05725 (MUA94_05715) - 1141221..1142363 (+) 1143 WP_262538620.1 cysteine desulfurase family protein -
  MUA94_RS05730 (MUA94_05720) mnmA 1142364..1143482 (+) 1119 WP_262538622.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47322.92 Da        Isoelectric Point: 8.3588

>NTDB_id=579048 MUA94_RS05700 WP_262538617.1 1137410..1138684(-) (rarA) [Staphylococcus aureus strain IVB6202]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSSQVILLLDEIHRLDKAKQDFLLPHLENGKVVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGHRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALFDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=579048 MUA94_RS05700 WP_262538617.1 1137410..1138684(-) (rarA) [Staphylococcus aureus strain IVB6202]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTAGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAGCAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAGTCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCATAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTTCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.571

99.057

0.679