Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MUA07_RS08335 Genome accession   NZ_CP094750
Coordinates   1716462..1717736 (+) Length   424 a.a.
NCBI ID   WP_000102746.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711462..1722736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS08305 (MUA07_08305) mnmA 1711663..1712781 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA07_RS08310 (MUA07_08310) - 1712782..1713924 (-) 1143 WP_262541858.1 cysteine desulfurase family protein -
  MUA07_RS08315 (MUA07_08315) - 1714236..1715255 (+) 1020 WP_252550451.1 LLM class flavin-dependent oxidoreductase -
  MUA07_RS08320 (MUA07_08320) - 1715487..1715633 (-) 147 WP_000009238.1 SAS049 family protein -
  MUA07_RS08325 (MUA07_08325) - 1715673..1715855 (-) 183 WP_000752909.1 CsbD family protein -
  MUA07_RS08330 (MUA07_08330) cymR 1715955..1716377 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  MUA07_RS08335 (MUA07_08335) rarA 1716462..1717736 (+) 1275 WP_000102746.1 replication-associated recombination protein A Machinery gene
  MUA07_RS08340 (MUA07_08340) - 1717897..1718670 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  MUA07_RS08345 (MUA07_08345) - 1718670..1718798 (-) 129 WP_041201405.1 hypothetical protein -
  MUA07_RS08355 (MUA07_08355) aspS 1719131..1720897 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  MUA07_RS08360 (MUA07_08360) hisS 1720913..1722175 (-) 1263 WP_262541859.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47267.84 Da        Isoelectric Point: 8.3539

>NTDB_id=578546 MUA07_RS08335 WP_000102746.1 1716462..1717736(+) (rarA) [Staphylococcus aureus strain IVB6248]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSTDNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=578546 MUA07_RS08335 WP_000102746.1 1716462..1717736(+) (rarA) [Staphylococcus aureus strain IVB6248]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTAGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAGCAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCACAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGGGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATCGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686