Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   KQ257_RS00250 Genome accession   NZ_CP076817
Coordinates   47959..48660 (+) Length   233 a.a.
NCBI ID   WP_004747380.1    Uniprot ID   A0A9E9PDK8
Organism   Acinetobacter baumannii strain UC24137     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 42959..53660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS00215 (KQ257_00215) kdsB 43482..44243 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQ257_RS00220 (KQ257_00220) - 44255..45235 (+) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  KQ257_RS00225 (KQ257_00225) - 45247..45588 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  KQ257_RS00230 (KQ257_00230) - 45606..46379 (+) 774 WP_000497302.1 TatD family hydrolase -
  KQ257_RS00235 (KQ257_00235) - 46417..47025 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KQ257_RS00240 (KQ257_00240) - 47035..47589 (+) 555 WP_000841371.1 type II secretion system protein -
  KQ257_RS00245 (KQ257_00245) xcpV 47579..47959 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  KQ257_RS00250 (KQ257_00250) xcpW 47959..48660 (+) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KQ257_RS00255 (KQ257_00255) gspK 48660..49619 (+) 960 WP_004747379.1 type II secretion system minor pseudopilin GspK -
  KQ257_RS00260 (KQ257_00260) - 49849..50445 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  KQ257_RS00265 (KQ257_00265) ung 50496..51209 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  KQ257_RS00270 (KQ257_00270) - 51206..52330 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  KQ257_RS00275 (KQ257_00275) tadA 52337..52840 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  KQ257_RS00280 (KQ257_00280) - 52910..53353 (+) 444 WP_004747375.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26629.59 Da        Isoelectric Point: 9.5501

>NTDB_id=578209 KQ257_RS00250 WP_004747380.1 47959..48660(+) (xcpW) [Acinetobacter baumannii strain UC24137]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=578209 KQ257_RS00250 WP_004747380.1 47959..48660(+) (xcpW) [Acinetobacter baumannii strain UC24137]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTACATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.571

100

0.996