NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	KQ256_RS09875	Genome accession	NZ_CP076814
Coordinates	2045084..2045785 (-)	Length	233 a.a.
NCBI ID	WP_004747380.1	Uniprot ID	A0A9E9PDK8
Organism	Acinetobacter baumannii strain UC21460
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2040084..2050785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ256_RS09845 (KQ256_09880)	-	2040391..2040834 (-)	444	WP_004747375.1	SRPBCC family protein	-
KQ256_RS09850 (KQ256_09885)	tadA	2040904..2041407 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
KQ256_RS09855 (KQ256_09890)	-	2041414..2042538 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
KQ256_RS09860 (KQ256_09895)	ung	2042535..2043248 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
KQ256_RS09865 (KQ256_09900)	-	2043299..2043895 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
KQ256_RS09870 (KQ256_09905)	gspK	2044125..2045084 (-)	960	WP_004747379.1	type II secretion system minor pseudopilin GspK	-
KQ256_RS09875 (KQ256_09910)	xcpW	2045084..2045785 (-)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KQ256_RS09880 (KQ256_09915)	xcpV	2045785..2046165 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
KQ256_RS09885 (KQ256_09920)	-	2046155..2046709 (-)	555	WP_000841371.1	type II secretion system protein	-
KQ256_RS09890 (KQ256_09925)	-	2046719..2047327 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KQ256_RS09895 (KQ256_09930)	-	2047365..2048138 (-)	774	WP_000497302.1	TatD family hydrolase	-
KQ256_RS09900 (KQ256_09935)	-	2048156..2048497 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
KQ256_RS09905 (KQ256_09940)	-	2048509..2049489 (-)	981	WP_004747384.1	DNA polymerase III, delta' subunit	-
KQ256_RS09910 (KQ256_09945)	kdsB	2049501..2050262 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26629.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=578181 KQ256_RS09875 WP_004747380.1 2045084..2045785(-) (xcpW) [Acinetobacter baumannii strain UC21460]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=578181 KQ256_RS09875 WP_004747380.1 2045084..2045785(-) (xcpW) [Acinetobacter baumannii strain UC21460]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTACATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0578181