Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KQ253_RS14000 Genome accession   NZ_CP076812
Coordinates   2872930..2873571 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain UC23022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2867930..2878571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS13980 (KQ253_13900) aroK 2868846..2869415 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KQ253_RS13985 (KQ253_13905) pilQ 2869427..2871592 (-) 2166 WP_001017038.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ253_RS13990 (KQ253_13910) pilP 2871655..2872182 (-) 528 WP_000695058.1 pilus assembly protein PilP Machinery gene
  KQ253_RS13995 (KQ253_13915) pilO 2872193..2872933 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ253_RS14000 (KQ253_13920) pilN 2872930..2873571 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  KQ253_RS14005 (KQ253_13925) pilM 2873571..2874629 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ253_RS14010 (KQ253_13930) ponA 2874791..2877346 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  KQ253_RS14015 (KQ253_13935) - 2877364..2878188 (-) 825 WP_086242007.1 putative RNA methyltransferase -
  KQ253_RS14020 (KQ253_13940) - 2878191..2878523 (-) 333 WP_000169601.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=578136 KQ253_RS14000 WP_000201227.1 2872930..2873571(-) (pilN) [Acinetobacter baumannii strain UC23022]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578136 KQ253_RS14000 WP_000201227.1 2872930..2873571(-) (pilN) [Acinetobacter baumannii strain UC23022]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCT
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709