Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CCX78_RS08485 Genome accession   NZ_AP017931
Coordinates   1646426..1648219 (-) Length   597 a.a.
NCBI ID   WP_056947304.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641426..1653219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS08470 (LASAK_01671) - 1642756..1643553 (+) 798 WP_096585498.1 tyrosine-protein phosphatase -
  CCX78_RS08475 (LASAK_01672) - 1644200..1645147 (+) 948 WP_096585501.1 UvrD-helicase domain-containing protein -
  CCX78_RS08480 (LASAK_01673) - 1645158..1646249 (+) 1092 WP_011373983.1 ATP-binding domain-containing protein -
  CCX78_RS08485 (LASAK_01674) rcrQ 1646426..1648219 (-) 1794 WP_056947304.1 ABC transporter ATP-binding protein Regulator
  CCX78_RS08490 (LASAK_01675) - 1648223..1649935 (-) 1713 WP_056947303.1 ABC transporter ATP-binding protein -
  CCX78_RS08495 (LASAK_01676) - 1650078..1650749 (+) 672 WP_056947300.1 TetR/AcrR family transcriptional regulator -
  CCX78_RS08500 (LASAK_01677) - 1650802..1651938 (-) 1137 WP_096585504.1 multidrug effflux MFS transporter -
  CCX78_RS08505 (LASAK_01678) rpsN 1652459..1652728 (-) 270 WP_025016208.1 30S ribosomal protein S14 -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66930.95 Da        Isoelectric Point: 5.6404

>NTDB_id=57787 CCX78_RS08485 WP_056947304.1 1646426..1648219(-) (rcrQ) [Latilactobacillus sakei strain LK-145]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNIFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTILNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=57787 CCX78_RS08485 WP_056947304.1 1646426..1648219(-) (rcrQ) [Latilactobacillus sakei strain LK-145]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTACGTCTTGAGTTCAGCGGCAACTTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGACCGCCATTCAGATGGCG
ATATCCTTAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGCCAATTGGTGTCGGGG
ACGGCCTTATTGATTGGTTTGCTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTCACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTTAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGTCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACGATTGATGGT
TTTGTTGAACATAACGAAAGTGTCCGGAAAGCGACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGGCAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGATATGGATTT
GGATACGTTACGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGAAAACCAGATGCGACTGACGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATAATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACATCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTTTTGATTTTGGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAACGTGATTCAGGGTCGGACTAGTTTTGTGATCGCCCATCGCTTGAAAACCATCCTAAATGCGGAT
CGGATTATCGTCTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTGTATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.803

97.99

0.38

Multiple sequence alignment