Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MQC90_RS06320 Genome accession   NZ_CP094361
Coordinates   1222128..1223045 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain NCIB 3610     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217128..1228045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS06305 trpS 1217708..1218700 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  MQC90_RS06310 oppA 1219444..1221081 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  MQC90_RS06315 oppB 1221189..1222124 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  MQC90_RS06320 amiD 1222128..1223045 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  MQC90_RS06325 oppD 1223050..1224126 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  MQC90_RS06330 oppF 1224128..1225045 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  MQC90_RS06335 yjbB 1225152..1226369 (+) 1218 WP_010886478.1 MFS transporter -
  MQC90_RS06340 yjbC 1226533..1227111 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  MQC90_RS06345 spx 1227292..1227687 (+) 396 WP_003245483.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=577631 MQC90_RS06320 WP_003232954.1 1222128..1223045(+) (amiD) [Bacillus subtilis strain NCIB 3610]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=577631 MQC90_RS06320 WP_003232954.1 1222128..1223045(+) (amiD) [Bacillus subtilis strain NCIB 3610]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364