Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KQ224_RS11035 Genome accession   NZ_CP076721
Coordinates   2143853..2144692 (+) Length   279 a.a.
NCBI ID   WP_216806660.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2138853..2149692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS11005 (KQ224_11005) - 2139314..2140192 (+) 879 WP_216806656.1 F0F1 ATP synthase subunit gamma -
  KQ224_RS11010 (KQ224_11010) atpD 2140214..2141620 (+) 1407 WP_216806657.1 F0F1 ATP synthase subunit beta -
  KQ224_RS11015 (KQ224_11015) - 2141630..2142046 (+) 417 WP_171988708.1 F0F1 ATP synthase subunit epsilon -
  KQ224_RS11020 (KQ224_11020) - 2142106..2142333 (+) 228 WP_171988707.1 DUF1146 family protein -
  KQ224_RS11025 (KQ224_11025) murA 2142356..2143639 (+) 1284 WP_216806658.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KQ224_RS11030 (KQ224_11030) - 2143632..2143823 (+) 192 WP_216806659.1 DNA-directed RNA polymerase subunit beta -
  KQ224_RS11035 (KQ224_11035) endA 2143853..2144692 (+) 840 WP_216806660.1 DNA/RNA non-specific endonuclease Machinery gene
  KQ224_RS11040 (KQ224_11040) pheS 2144944..2145987 (+) 1044 WP_174845671.1 phenylalanine--tRNA ligase subunit alpha -
  KQ224_RS11045 (KQ224_11045) - 2146409..2146930 (+) 522 WP_171988702.1 GNAT family N-acetyltransferase -
  KQ224_RS11050 (KQ224_11050) pheT 2146932..2149331 (+) 2400 WP_216806661.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30145.33 Da        Isoelectric Point: 6.2370

>NTDB_id=577613 KQ224_RS11035 WP_216806660.1 2143853..2144692(+) (endA) [Streptococcus parasuis strain H35]
MAKNNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
FDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=577613 KQ224_RS11035 WP_216806660.1 2143853..2144692(+) (endA) [Streptococcus parasuis strain H35]
ATGGCGAAGAATAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTGCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACAGGTAATGGACGTACGTCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
TTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.49

91.398

0.599
  endA Streptococcus pneumoniae D39

65.49

91.398

0.599
  endA Streptococcus pneumoniae R6

65.49

91.398

0.599
  endA Streptococcus pneumoniae TIGR4

65.49

91.398

0.599