Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KRG72_RS03425 Genome accession   NZ_CP076703
Coordinates   658046..658912 (+) Length   288 a.a.
NCBI ID   WP_074601574.1    Uniprot ID   A0AAE8HJE2
Organism   Streptococcus equinus strain S1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 653046..663912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS03395 (KRG72_03395) - 653277..654152 (+) 876 WP_020916491.1 F0F1 ATP synthase subunit gamma -
  KRG72_RS03400 (KRG72_03400) atpD 654220..655626 (+) 1407 WP_039697146.1 F0F1 ATP synthase subunit beta -
  KRG72_RS03405 (KRG72_03405) - 655639..656055 (+) 417 WP_004231089.1 F0F1 ATP synthase subunit epsilon -
  KRG72_RS03410 (KRG72_03410) - 656178..656414 (+) 237 WP_004231090.1 DUF1146 family protein -
  KRG72_RS03415 (KRG72_03415) murA 656476..657750 (+) 1275 WP_307770178.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KRG72_RS03420 (KRG72_03420) - 657754..657942 (+) 189 WP_020916495.1 DNA-directed RNA polymerase subunit beta -
  KRG72_RS03425 (KRG72_03425) endA 658046..658912 (+) 867 WP_074601574.1 DNA/RNA non-specific endonuclease Machinery gene
  KRG72_RS03430 (KRG72_03430) pheS 659204..660247 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  KRG72_RS03435 (KRG72_03435) - 660280..660804 (+) 525 WP_258255880.1 N-acetyltransferase -
  KRG72_RS03440 (KRG72_03440) pheT 660874..663279 (+) 2406 WP_258255881.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30849.02 Da        Isoelectric Point: 8.2790

>NTDB_id=577459 KRG72_RS03425 WP_074601574.1 658046..658912(+) (endA) [Streptococcus equinus strain S1]
MAKKSKLSKQTKSFISLLVLLVSIGAGWLTTSDSSDPVNQVISLITGESSAKIVSNQSSANQATPSQELADSVLTDSVKA
QLGSNLEWNGAGAYLVNGNKTDLNARVASKPYANNKTKIVQGQTIPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQ
VQNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEASSEDSTGQNYYEGQVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFIPNVQSGLSFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=577459 KRG72_RS03425 WP_074601574.1 658046..658912(+) (endA) [Streptococcus equinus strain S1]
ATGGCAAAGAAATCAAAACTGTCTAAACAGACAAAATCATTTATTTCTTTATTAGTTTTATTGGTTAGTATTGGTGCGGG
TTGGCTGACAACTTCAGATTCAAGTGATCCTGTTAATCAAGTTATTTCCTTGATTACGGGAGAATCATCTGCAAAGATTG
TGTCAAATCAGTCTTCTGCTAATCAAGCAACACCAAGTCAAGAATTAGCAGACTCAGTCTTAACAGACAGCGTTAAAGCT
CAGCTTGGTTCAAATTTAGAATGGAACGGTGCGGGAGCTTATTTGGTTAACGGAAATAAAACCGATTTGAATGCAAGAGT
AGCCAGCAAACCTTATGCCAATAACAAAACAAAAATTGTGCAAGGTCAGACTATTCCAACGGTCGCAAATGCTTTGTTGA
GTAAGTCGACACGTCAATATAGAAGCCGTGAGGAAACTGGAAATGGCTCAACTTCATGGACACCAGCGGGCTGGCACCAA
GTGCAAAATCTTTCTGGAACATACAGTCACGCCGTGGACCGTGGGCACTTGCTCGGCTATGCTTTAGTTGGTGGCTTAAA
AGGCTTTGATGCTTCAACAAGCAATCCTGAAAATGTAGCCACTCAGACAGCCTGGGCAAATGAAGCTAGTTCAGAAGACT
CAACGGGTCAAAATTACTACGAAGGTCAGGTCAGAAGAGCACTTGATCAGAATAAACGTGTTCGTTACCGCGTGACTTTA
ATCTATGATGGCGATAATATTCTTGCTAGCGGGACACATTTGGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGT
TTTCATTCCGAATGTCCAAAGTGGTTTAAGCTTTGATTATTATTCAGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.068

81.944

0.566
  endA Streptococcus pneumoniae D39

69.068

81.944

0.566
  endA Streptococcus pneumoniae R6

69.068

81.944

0.566
  endA Streptococcus pneumoniae TIGR4

69.068

81.944

0.566