Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   KRG72_RS01850 Genome accession   NZ_CP076703
Coordinates   342864..343796 (+) Length   310 a.a.
NCBI ID   WP_074565179.1    Uniprot ID   A0AAE8HM92
Organism   Streptococcus equinus strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 337864..348796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS01830 (KRG72_01830) - 338082..339737 (+) 1656 WP_074561358.1 peptide ABC transporter substrate-binding protein -
  KRG72_RS01835 (KRG72_01835) - 339849..340763 (+) 915 WP_006530948.1 ABC transporter permease -
  KRG72_RS01840 (KRG72_01840) - 340775..341806 (+) 1032 WP_074565183.1 ABC transporter permease -
  KRG72_RS01845 (KRG72_01845) oppD 341818..342864 (+) 1047 WP_074565181.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS01850 (KRG72_01850) amiF 342864..343796 (+) 933 WP_074565179.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35068.84 Da        Isoelectric Point: 5.4755

>NTDB_id=577446 KRG72_RS01850 WP_074565179.1 342864..343796(+) (amiF) [Streptococcus equinus strain S1]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIDFNGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQVYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKKALS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=577446 KRG72_RS01850 WP_074565179.1 342864..343796(+) (amiF) [Streptococcus equinus strain S1]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCCATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTTTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTAAAACTTTACGATATTAGTGATGGTGAAATCGACTTTAATGGAGAAACAGTTTCTAACCTT
AAAGGTAAAGAACTACATGAATTCCGTAAAAATGTGCAAATGATTTTCCAAGACCCACAAGCAAGTCTTAATGGACGTAT
GAAAATCCGTGATATCGTTGCTGAGGGTCTTGATATTCACAAACTCGTTAATAGTAAAGAAGAACGTGACGAAAAAGTTC
AAGAATTACTTTCACTAGTAGGATTGAACAAAGATCACATGACTCGTTACCCACACGAATTCTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAACTTGATGCAAAAACTTCAACGCGAAAAAGGCTTGACTTATCTCTTCATCGCTCACGATT
TGTCAATGGTCAAATACATTTCAGATCGTATTGGTGTAATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAATAACCCAATTCACCCATACACTAAGAGTTTATTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGCGTGCATCAAGTTTATGATCCAAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATTACACCAGGTCACT
TTGTACTTTCTACTGAAGCTGAAGCTGAAGAATATAAAAAAGCATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.536

98.71

0.558
  amiF Streptococcus thermophilus LMG 18311

56.209

98.71

0.555
  amiF Streptococcus salivarius strain HSISS4

55.7

99.032

0.552