Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MQV61_RS01190 Genome accession   NZ_CP094339
Coordinates   261108..261872 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain W224N     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 256108..266872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQV61_RS01160 - 256643..257827 (-) 1185 Protein_230 PTS galactitol transporter subunit IIC -
  MQV61_RS01165 - 257885..258582 (+) 698 WP_223230114.1 IS1-like element IS1A family transposase -
  MQV61_RS01170 - 258602..258928 (-) 327 Protein_232 PTS sugar transporter subunit IIA -
  MQV61_RS01175 - 258953..259699 (-) 747 WP_001332161.1 GntR family transcriptional regulator -
  MQV61_RS01180 nikR 259898..260299 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  MQV61_RS01185 nikE 260305..261111 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  MQV61_RS01190 amiE 261108..261872 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  MQV61_RS01195 nikC 261872..262705 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  MQV61_RS01200 nikB 262702..263646 (-) 945 WP_000947074.1 nickel ABC transporter permease subunit NikB -
  MQV61_RS01205 nikA 263646..265220 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  MQV61_RS01210 acpT 265331..265918 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=577406 MQV61_RS01190 WP_001136232.1 261108..261872(-) (amiE) [Escherichia coli strain W224N]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=577406 MQV61_RS01190 WP_001136232.1 261108..261872(-) (amiE) [Escherichia coli strain W224N]
ATGCCACAACAGATTGAGCTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCA
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398