Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LUW75_RS21135 Genome accession   NZ_CP094264
Coordinates   4646249..4647754 (+) Length   501 a.a.
NCBI ID   WP_250337017.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4641249..4652754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS21115 (LUW75_21115) - 4642511..4643299 (-) 789 WP_250337013.1 peptidylprolyl isomerase -
  LUW75_RS21120 (LUW75_21120) - 4643440..4644147 (+) 708 WP_250337014.1 MBL fold metallo-hydrolase -
  LUW75_RS21125 (LUW75_21125) hisS 4644161..4645423 (+) 1263 WP_250337015.1 histidine--tRNA ligase -
  LUW75_RS21130 (LUW75_21130) - 4645571..4646191 (+) 621 WP_250337016.1 vitamin K epoxide reductase family protein -
  LUW75_RS21135 (LUW75_21135) rarA 4646249..4647754 (+) 1506 WP_250337017.1 replication-associated recombination protein A Machinery gene
  LUW75_RS21140 (LUW75_21140) rpsD 4647947..4648561 (+) 615 WP_168439013.1 30S ribosomal protein S4 -
  LUW75_RS21145 (LUW75_21145) - 4649188..4649628 (+) 441 WP_250337018.1 DUF948 domain-containing protein -
  LUW75_RS21150 (LUW75_21150) - 4649637..4649981 (+) 345 WP_250337019.1 hypothetical protein -
  LUW75_RS21155 (LUW75_21155) alaS 4649981..4652650 (+) 2670 WP_250337020.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53101.19 Da        Isoelectric Point: 9.6426

>NTDB_id=577323 LUW75_RS21135 WP_250337017.1 4646249..4647754(+) (rarA) [Streptomyces sp. MRC013]
MEPDLFTAAAEDRQEKEPSRSPLAVRMRPRTLDEVVGQRHLLKPGSPLRRLVGEGGGGPAGTSSVVLWGPPGTGKTTLAH
VVSRATDKRFVELSAITAGVKEVRAVIDGARRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLVAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALTGERGLAGEVALPEDAEEHLLRIAGGDARRALTALEAAAGAAMAKGETE
ITLATLEETVDRAAVRYDRDGDQHYDVASAFIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDVGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAVQAARADVRAGLAGPVPAHLRDGHYKGAAGLGHAQGYVY
PHDVPGGIAAQQYAPDAVRERRYYRPTRYGAEARYAEVVEKVRERLRGDGAAPGGRPRSGGRGHRSRKRSPGGRPGRGGR
PGNRRCRGACTLYGSSCALGC

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=577323 LUW75_RS21135 WP_250337017.1 4646249..4647754(+) (rarA) [Streptomyces sp. MRC013]
GTGGAGCCCGACCTCTTTACCGCCGCCGCCGAGGACCGCCAGGAGAAGGAGCCGTCGCGCAGCCCGCTCGCGGTGCGGAT
GCGCCCGCGGACCCTGGACGAGGTCGTCGGGCAGCGGCACCTGCTGAAGCCCGGGTCGCCGCTGCGCCGCCTGGTCGGCG
AAGGCGGGGGCGGCCCGGCCGGGACCTCGTCCGTCGTCCTCTGGGGTCCGCCCGGCACCGGCAAGACGACCCTGGCGCAC
GTGGTCTCCAGGGCCACCGACAAGCGTTTCGTGGAACTGTCCGCGATCACCGCCGGGGTGAAGGAGGTTCGCGCGGTCAT
CGACGGCGCTCGCCGCGCGGCGGGGGGTTTCGGCAAGGAGACCGTGCTGTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CGCAGCAGGACTCGTTGCTGCCGGCCGTCGAGAACCGCTGGGTCACCCTCGTCGCGGCGACGACGGAGAACCCCTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTCCTGTTGACGCTGGAGCCGCTCACCGACGACGACTTGCGCGGTCTGCT
GCGGCGCGCGCTGACCGGGGAACGCGGCCTGGCCGGCGAGGTCGCACTGCCCGAGGACGCGGAGGAGCACCTGCTGCGCA
TCGCCGGCGGCGACGCGCGGCGGGCGCTGACGGCGCTGGAGGCGGCGGCCGGGGCGGCCATGGCCAAGGGCGAGACGGAG
ATCACGCTCGCCACGCTGGAGGAGACCGTGGACCGCGCCGCGGTGAGGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCCTTCATCAAGTCGATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCGCGGCGGCTGATGATCTCCGCGAGCGAGGACGTCGGGCTCGCGGACCCGACGGCGCTG
CCCACCGCGGTGGCCGCGGCCCAGGCGGTCGCGATGATCGGCTTCCCCGAGGCGGCCCTGACGCTCAGCCACGCCACGAT
CGCCCTGGCCCTGGCGCCGAAGTCGAACGCCGCCACGCTGGCCGTCCAGGCCGCCCGGGCGGACGTCCGGGCGGGACTCG
CCGGACCGGTGCCGGCGCACCTGCGCGACGGGCACTACAAGGGGGCGGCCGGGCTGGGGCACGCGCAGGGGTACGTGTAC
CCGCACGACGTGCCGGGCGGGATCGCCGCCCAGCAGTACGCCCCGGACGCGGTGCGGGAGCGGCGCTACTACCGACCGAC
CCGCTACGGCGCGGAAGCGCGGTACGCGGAGGTGGTGGAGAAGGTGCGGGAGCGGCTGCGCGGCGACGGGGCGGCCCCCG
GCGGCCGTCCTAGGAGCGGTGGCCGCGGCCACCGCAGCCGAAAGCGGTCCCCCGGCGGCCGTCCGGGGCGGGGCGGCCGC
CCCGGGAACCGGCGGTGCCGCGGAGCGTGTACCCTGTACGGGAGTTCGTGTGCGCTCGGCTGCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.522

85.629

0.381