Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MP387_RS02285 Genome accession   NZ_CP094226
Coordinates   449264..450535 (-) Length   423 a.a.
NCBI ID   WP_242747386.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 444264..455535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS02255 (MP387_02255) - 444856..445092 (-) 237 WP_033630119.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MP387_RS02260 (MP387_02260) - 445389..446870 (+) 1482 WP_242747379.1 M protein trans-acting positive regulator PRD domain-containing protein -
  MP387_RS02265 (MP387_02265) - 447140..447340 (+) 201 WP_278192669.1 hypothetical protein -
  MP387_RS02270 (MP387_02270) - 447461..448171 (+) 711 WP_242747384.1 hypothetical protein -
  MP387_RS02275 (MP387_02275) - 448420..448856 (-) 437 Protein_395 XRE family transcriptional regulator -
  MP387_RS02285 (MP387_02285) rarA 449264..450535 (-) 1272 WP_242747386.1 replication-associated recombination protein A Machinery gene
  MP387_RS02290 (MP387_02290) - 450651..451121 (+) 471 WP_000257129.1 DUF3013 family protein -
  MP387_RS02295 (MP387_02295) - 451140..452213 (+) 1074 WP_242747388.1 site-2 protease family protein -
  MP387_RS02300 (MP387_02300) - 452316..452855 (+) 540 WP_049537159.1 hypothetical protein -
  MP387_RS02305 (MP387_02305) - 452909..453343 (+) 435 WP_242747390.1 NUDIX hydrolase -
  MP387_RS02310 (MP387_02310) - 453340..453741 (+) 402 WP_096422641.1 hypothetical protein -
  MP387_RS02315 (MP387_02315) prmA 453720..454670 (+) 951 WP_217970964.1 50S ribosomal protein L11 methyltransferase -
  MP387_RS02320 (MP387_02320) - 454672..455415 (+) 744 WP_242747392.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46911.43 Da        Isoelectric Point: 6.2424

>NTDB_id=577201 MP387_RS02285 WP_242747386.1 449264..450535(-) (rarA) [Streptococcus oralis strain 1648]
MPDNLALRMRPKTIDQVIGQKHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPVELDEEALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQNYLYPHNYPGNWVKQDYLPEKIRDHHYFSP
EDSGKYERALAQRKETIDKLRDL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=577201 MP387_RS02285 WP_242747386.1 449264..450535(-) (rarA) [Streptococcus oralis strain 1648]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCAAAAACCATTGACCAGGTCATCGGTCAGAAGCATCTAGTCGGACCTGG
AAAAATTATCCGTCGCATGGTGGAAGCCAATCGTCTGTCCTCCATGATTCTCTACGGACCTCCAGGTATTGGAAAGACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACCTTTAATGCGACAGTGGATAGTAAAAAGCGACTC
CAAGAAATCGCTGAAGAAGCTAAATTTTCAGGTGGATTGGTCCTACTACTGGACGAGATTCACCGACTAGATAAAACCAA
GCAAGACTTTCTACTTCCCCTCTTGGAAAGTGGTCTGGTCATCATGATTGGCGCTACGACTGAAAATCCTTTCTTTTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCTCTTCAG
ATAGCTCTAAGTAACCCTGAGCGTGGTTTTGATTTTCCAGTTGAGCTAGATGAGGAGGCGCTGGATTTCATCGCAACTTC
TACAAACGGAGATCTTCGCTCTGCCTTCAACTCACTTGACTTGGCTGTTCTTTCTACTCCCGAAAATGACAAGGGCATCC
GCCATATCACTCTAGACATCATGGAAAATAGCCTGCAGCGGAGCTACATTACCATGGATAAGGATGGAGATGGACACTAC
GATGTCCTCTCAGCCCTGCAAAAGTCCATCCGTGGCTCTGATGTGGATGCTAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGCGATTTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTGGCCAATCCTGAAGCCC
AGATTCATACCGTGACTGCTCTAGATGCTGCTCAAAAGATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTCTCTCCAAAATCCAACTCAGCCTATGTGGCTATGGACAAGGCTCTTGCTGACCTCAAAACATCGGG
GCATTTGCCTATCCCTCGGCACCTGCGTGATGGTCATTACAGTGGAAGCAAGGAATTGGGCAATGCCCAAAACTATCTCT
ATCCGCACAACTATCCTGGAAACTGGGTCAAACAAGATTACTTACCCGAAAAAATACGTGATCATCACTACTTCTCACCA
GAAGATAGTGGAAAATACGAACGGGCCTTAGCTCAACGCAAGGAAACCATTGATAAATTACGGGACTTGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.794

98.582

0.57