Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF93_RS06735 Genome accession   NZ_CP094178
Coordinates   1388783..1389049 (-) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori strain Hpfe060     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383783..1394049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS06710 (MPF93_06710) - 1384576..1384764 (+) 189 Protein_1314 DUF1104 domain-containing protein -
  MPF93_RS06715 (MPF93_06715) - 1384727..1386358 (-) 1632 WP_245073523.1 type IA DNA topoisomerase -
  MPF93_RS07765 - 1386361..1388736 (-) 2376 Protein_1316 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPF93_RS06735 (MPF93_06735) comB3 1388783..1389049 (-) 267 WP_001173705.1 hypothetical protein Machinery gene
  MPF93_RS06740 (MPF93_06740) - 1389050..1389352 (-) 303 WP_342370090.1 virB2 type IV secretion protein -
  MPF93_RS07770 - 1389349..1390873 (-) 1525 Protein_1319 hypothetical protein -
  MPF93_RS06755 (MPF93_06755) - 1390880..1391173 (-) 294 WP_245073533.1 hypothetical protein -
  MPF93_RS06760 (MPF93_06760) - 1391193..1391970 (-) 778 Protein_1321 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=577164 MPF93_RS06735 WP_001173705.1 1388783..1389049(-) (comB3) [Helicobacter pylori strain Hpfe060]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=577164 MPF93_RS06735 WP_001173705.1 1388783..1389049(-) (comB3) [Helicobacter pylori strain Hpfe060]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398