Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF93_RS05035 Genome accession   NZ_CP094178
Coordinates   1056234..1057409 (+) Length   391 a.a.
NCBI ID   WP_245073254.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051234..1062409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS05010 (MPF93_05010) - 1051563..1052459 (+) 897 WP_245073250.1 response regulator -
  MPF93_RS05015 (MPF93_05015) - 1052684..1053550 (+) 867 WP_245074735.1 5'-3' exonuclease -
  MPF93_RS05020 (MPF93_05020) - 1053572..1054822 (-) 1251 WP_245073252.1 outer membrane family protein -
  MPF93_RS05025 (MPF93_05025) - 1054990..1055856 (+) 867 WP_096530496.1 DnaJ C-terminal domain-containing protein -
  MPF93_RS05030 (MPF93_05030) - 1055866..1056237 (+) 372 WP_000333001.1 helix-turn-helix transcriptional regulator -
  MPF93_RS05035 (MPF93_05035) rarA 1056234..1057409 (+) 1176 WP_245073254.1 replication-associated recombination protein A Machinery gene
  MPF93_RS05040 (MPF93_05040) fur 1057570..1058022 (+) 453 WP_180519474.1 ferric iron uptake transcriptional regulator -
  MPF93_RS05045 (MPF93_05045) - 1058042..1058539 (-) 498 WP_154414229.1 DUF2147 domain-containing protein -
  MPF93_RS05050 (MPF93_05050) - 1058536..1059072 (-) 537 WP_033586328.1 YhcH/YjgK/YiaL family protein -
  MPF93_RS05055 (MPF93_05055) fliY 1059100..1059963 (-) 864 WP_245073256.1 flagellar motor switch protein FliY -
  MPF93_RS05060 (MPF93_05060) fliM 1059967..1061031 (-) 1065 WP_000763604.1 flagellar motor switch protein FliM -
  MPF93_RS05065 (MPF93_05065) - 1061024..1061800 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPF93_RS05070 (MPF93_05070) - 1061778..1062092 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43949.65 Da        Isoelectric Point: 8.1219

>NTDB_id=577152 MPF93_RS05035 WP_245073254.1 1056234..1057409(+) (rarA) [Helicobacter pylori strain Hpfe060]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLIHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=577152 MPF93_RS05035 WP_245073254.1 1056234..1057409(+) (rarA) [Helicobacter pylori strain Hpfe060]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
TCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTATCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391