Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG60_RS04950 Genome accession   NZ_CP094177
Coordinates   1041697..1042872 (+) Length   391 a.a.
NCBI ID   WP_245083953.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036697..1047872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS04925 (MPG60_04925) - 1036984..1037880 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG60_RS04930 (MPG60_04930) - 1038106..1038972 (+) 867 WP_245085734.1 5'-3' exonuclease -
  MPG60_RS04935 (MPG60_04935) - 1039035..1040285 (-) 1251 WP_245083951.1 outer membrane family protein -
  MPG60_RS04940 (MPG60_04940) - 1040453..1041319 (+) 867 WP_245083952.1 DnaJ C-terminal domain-containing protein -
  MPG60_RS04945 (MPG60_04945) - 1041329..1041700 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG60_RS04950 (MPG60_04950) rarA 1041697..1042872 (+) 1176 WP_245083953.1 replication-associated recombination protein A Machinery gene
  MPG60_RS04955 (MPG60_04955) fur 1043031..1043483 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG60_RS04960 (MPG60_04960) - 1043503..1044000 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG60_RS04965 (MPG60_04965) - 1043997..1044404 (-) 408 Protein_968 YhcH/YjgK/YiaL family protein -
  MPG60_RS04970 (MPG60_04970) fliY 1044456..1045319 (-) 864 WP_245083954.1 flagellar motor switch protein FliY -
  MPG60_RS04975 (MPG60_04975) fliM 1045323..1046387 (-) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG60_RS04980 (MPG60_04980) - 1046380..1047156 (-) 777 WP_015643009.1 RNA polymerase sigma factor FliA -
  MPG60_RS04985 (MPG60_04985) - 1047134..1047448 (-) 315 WP_120823673.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43917.54 Da        Isoelectric Point: 7.7773

>NTDB_id=577113 MPG60_RS04950 WP_245083953.1 1041697..1042872(+) (rarA) [Helicobacter pylori strain Hpfe062]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEAHIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=577113 MPG60_RS04950 WP_245083953.1 1041697..1042872(+) (rarA) [Helicobacter pylori strain Hpfe062]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCACATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.65

100

0.386