Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CNZW441b_RS06375 Genome accession   NZ_CP076657
Coordinates   1256908..1257438 (-) Length   176 a.a.
NCBI ID   WP_216681327.1    Uniprot ID   -
Organism   Campylobacter novaezeelandiae strain W441b     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251908..1262438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS06355 (CNZW441b_1266) - 1252226..1253728 (-) 1503 WP_216681325.1 amino acid adenylation domain-containing protein -
  CNZW441b_RS06360 (CNZW441b_1267) - 1253784..1254992 (+) 1209 WP_131163889.1 DUF2920 family protein -
  CNZW441b_RS08155 - 1255242..1255433 (-) 192 WP_244985434.1 hypothetical protein -
  CNZW441b_RS08160 (CNZW441b_1268) - 1255499..1255654 (-) 156 WP_244985435.1 hypothetical protein -
  CNZW441b_RS06370 (CNZW441b_1269) - 1255704..1256921 (-) 1218 WP_216681326.1 DUF2920 family protein -
  CNZW441b_RS06375 (CNZW441b_1270) ctsG 1256908..1257438 (-) 531 WP_216681327.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CNZW441b_RS06380 (CNZW441b_1271) tsaD 1257448..1258455 (-) 1008 WP_131186722.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CNZW441b_RS06385 (CNZW441b_1272) - 1258452..1259852 (-) 1401 WP_131186723.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CNZW441b_RS06390 (CNZW441b_1273) dxr 1259862..1260929 (-) 1068 WP_131186724.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CNZW441b_RS06395 (CNZW441b_1274) - 1260926..1261654 (-) 729 WP_200218845.1 phosphatidate cytidylyltransferase -
  CNZW441b_RS06400 (CNZW441b_1275) - 1261663..1261989 (-) 327 WP_131186726.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19403.70 Da        Isoelectric Point: 8.4630

>NTDB_id=577088 CNZW441b_RS06375 WP_216681327.1 1256908..1257438(-) (ctsG) [Campylobacter novaezeelandiae strain W441b]
MKKAFTILELIFVIIILGILAAIALPKLNISKDEAELSKSLNNLKILINDLSIYALKNDKLSTLRAMSNVKEIQNVDLSQ
ISGTKEVFFKVGNDDKCIKLIFIDKLNFTLMGIASNDTIKNLIENVANTSSLEALENADFTSNSKDKACVSLSKNENFKN
IASKVYVLLGEMSANK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=577088 CNZW441b_RS06375 WP_216681327.1 1256908..1257438(-) (ctsG) [Campylobacter novaezeelandiae strain W441b]
ATGAAAAAAGCTTTTACTATTTTAGAGCTTATTTTTGTAATTATTATTTTAGGAATTTTAGCAGCTATTGCTTTGCCAAA
ATTAAACATCAGTAAAGATGAAGCAGAGCTCAGTAAATCTTTAAATAATCTTAAAATTTTAATTAATGATTTGAGTATTT
ATGCTTTAAAAAATGATAAACTTTCTACCCTTAGAGCAATGAGCAATGTAAAAGAAATTCAAAATGTAGATTTAAGTCAG
ATTAGCGGTACTAAAGAAGTTTTTTTTAAAGTTGGTAATGATGATAAATGTATCAAACTCATTTTTATTGATAAGCTAAA
TTTTACTTTAATGGGAATTGCAAGCAATGATACTATAAAAAATCTCATAGAAAATGTAGCCAATACTTCTTCTTTAGAGG
CTTTAGAAAATGCAGATTTTACTTCTAATTCTAAGGATAAAGCTTGTGTTAGTTTAAGTAAAAATGAAAATTTCAAAAAT
ATTGCTAGTAAGGTTTATGTTTTATTAGGAGAAATGAGTGCTAATAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

67.442

97.727

0.659