Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG43_RS06655 Genome accession   NZ_CP094175
Coordinates   1394352..1394618 (-) Length   88 a.a.
NCBI ID   WP_001173707.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe063     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389352..1399618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS06635 (MPG43_06635) - 1390150..1390331 (+) 182 Protein_1299 DUF1104 domain-containing protein -
  MPG43_RS06640 (MPG43_06640) - 1390303..1391934 (-) 1632 WP_245030222.1 type IA DNA topoisomerase -
  MPG43_RS06650 (MPG43_06650) - 1391937..1394305 (-) 2369 Protein_1301 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG43_RS06655 (MPG43_06655) comB3 1394352..1394618 (-) 267 WP_001173707.1 hypothetical protein Machinery gene
  MPG43_RS06660 (MPG43_06660) - 1394619..1394921 (-) 303 WP_342370008.1 virB2 type IV secretion protein -
  MPG43_RS06665 (MPG43_06665) - 1394918..1396441 (-) 1524 WP_245030228.1 toprim domain-containing protein -
  MPG43_RS06670 (MPG43_06670) - 1396448..1396741 (-) 294 WP_245030230.1 hypothetical protein -
  MPG43_RS06675 (MPG43_06675) - 1396761..1397484 (-) 724 Protein_1306 hypothetical protein -
  MPG43_RS06680 (MPG43_06680) tnpA 1397582..1398028 (-) 447 WP_245029797.1 IS200/IS605 family transposase -
  MPG43_RS06685 (MPG43_06685) - 1398079..1399362 (+) 1284 WP_245029799.1 transposase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10148.95 Da        Isoelectric Point: 4.8782

>NTDB_id=577084 MPG43_RS06655 WP_001173707.1 1394352..1394618(-) (comB3) [Helicobacter pylori strain Hpfe063]
MALHIVCVESINIREISKRETFLGLNLDSWVVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=577084 MPG43_RS06655 WP_001173707.1 1394352..1394618(-) (comB3) [Helicobacter pylori strain Hpfe063]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGGTTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398