Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CNZW441b_RS05320 Genome accession   NZ_CP076657
Coordinates   1032346..1033080 (-) Length   244 a.a.
NCBI ID   WP_131165847.1    Uniprot ID   -
Organism   Campylobacter novaezeelandiae strain W441b     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027346..1038080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS05285 (CNZW441b_1053) - 1028248..1029522 (-) 1275 WP_131165844.1 MFS transporter -
  CNZW441b_RS05290 (CNZW441b_1054) rpsF 1029733..1030110 (+) 378 WP_131162949.1 30S ribosomal protein S6 -
  CNZW441b_RS05295 (CNZW441b_1055) - 1030119..1030631 (+) 513 WP_131165845.1 single-stranded DNA-binding protein -
  CNZW441b_RS05300 (CNZW441b_1056) rpsR 1030643..1030903 (+) 261 WP_131162951.1 30S ribosomal protein S18 -
  CNZW441b_RS05305 (CNZW441b_1057) - 1030906..1031361 (-) 456 WP_131165846.1 hypothetical protein -
  CNZW441b_RS05310 (CNZW441b_1058) - 1031336..1032049 (-) 714 WP_131162953.1 hypothetical protein -
  CNZW441b_RS05315 (CNZW441b_1059) - 1032046..1032345 (-) 300 WP_131162954.1 type II secretion system protein -
  CNZW441b_RS05320 (CNZW441b_1060) proC 1032346..1033080 (-) 735 WP_131165847.1 pyrroline-5-carboxylate reductase Machinery gene
  CNZW441b_RS05325 (CNZW441b_1061) fliW 1033084..1033488 (-) 405 WP_131165848.1 flagellar assembly protein FliW -
  CNZW441b_RS05330 (CNZW441b_1062) bamD 1033655..1034305 (+) 651 WP_131165854.1 outer membrane protein assembly factor BamD -
  CNZW441b_RS05335 (CNZW441b_1063) lon 1034315..1036690 (+) 2376 WP_131165849.1 endopeptidase La -
  CNZW441b_RS08145 - 1036947..1037114 (+) 168 Protein_1036 hypothetical protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26820.20 Da        Isoelectric Point: 8.4209

>NTDB_id=577082 CNZW441b_RS05320 WP_131165847.1 1032346..1033080(-) (proC) [Campylobacter novaezeelandiae strain W441b]
MTDIYILGNGAMASALACGLQEKYQVYIAGRDEKKLTDLEKQGFKTLLYKDFSLENKNVILAFKPYALKDMANILNAQAR
ILISVLANVSFDTLKCIKAQNYVRIMPNIAAKYKASATPYLIQNSYFKDEIIQILQTFGNIYELKEEKQMNAAMAISGCA
PAFLALIAESIADGGVNEGLGRDLSVELTQGLFESFAQLLSHKHPALIKEKICSPAGVTIKGVRTLEKYAIRSAFIEALN
SSSS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=577082 CNZW441b_RS05320 WP_131165847.1 1032346..1033080(-) (proC) [Campylobacter novaezeelandiae strain W441b]
ATGACAGATATTTATATTCTTGGAAATGGAGCTATGGCAAGTGCATTAGCTTGCGGTTTACAAGAAAAATACCAAGTTTA
TATTGCAGGAAGAGACGAAAAAAAACTTACAGATTTAGAAAAACAAGGTTTTAAAACTTTACTTTATAAAGATTTCAGTT
TAGAAAATAAAAACGTTATTTTAGCTTTTAAACCTTATGCTTTAAAGGATATGGCAAATATTTTAAACGCTCAAGCAAGG
ATTCTTATTTCTGTTTTAGCTAATGTTTCTTTTGATACTTTAAAATGTATTAAAGCACAAAATTATGTCAGAATTATGCC
AAATATTGCGGCAAAATATAAAGCTTCTGCTACTCCATATCTAATTCAAAATTCGTATTTTAAGGATGAAATTATTCAGA
TTTTGCAAACTTTTGGCAATATCTATGAACTAAAAGAAGAAAAACAAATGAATGCTGCAATGGCTATTAGCGGTTGTGCC
CCAGCGTTTTTAGCTTTGATAGCTGAAAGTATTGCCGATGGCGGAGTTAATGAAGGATTGGGCAGAGATTTAAGTGTTGA
ACTTACTCAGGGTCTATTTGAAAGTTTTGCTCAATTGTTGTCGCATAAACATCCAGCTTTAATTAAAGAAAAAATTTGTT
CTCCTGCTGGTGTTACTATCAAAGGTGTAAGAACTTTAGAAAAATATGCCATTAGGTCTGCTTTTATAGAAGCGTTAAAT
TCTAGCTCATCTTAG

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-87)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

65.56

98.77

0.648