Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | LEUCM_RS07975 | Genome accession | NZ_AP017929 |
| Coordinates | 1601480..1602760 (+) | Length | 426 a.a. |
| NCBI ID | WP_011374543.1 | Uniprot ID | Q38XE0 |
| Organism | Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1596480..1607760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LEUCM_RS07955 (LACBS_01578) | rpsD | 1597193..1597798 (+) | 606 | WP_011374547.1 | 30S ribosomal protein S4 | - |
| LEUCM_RS07960 (LACBS_01579) | - | 1597894..1598499 (-) | 606 | WP_025015817.1 | DUF1054 domain-containing protein | - |
| LEUCM_RS07965 (LACBS_01580) | - | 1598570..1599013 (+) | 444 | WP_016265018.1 | YueI family protein | - |
| LEUCM_RS07970 (LACBS_01581) | gshAB | 1599068..1601347 (-) | 2280 | WP_025015818.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| LEUCM_RS07975 (LACBS_01582) | rarA | 1601480..1602760 (+) | 1281 | WP_011374543.1 | replication-associated recombination protein A | Machinery gene |
| LEUCM_RS07980 (LACBS_01583) | - | 1603075..1603350 (+) | 276 | WP_016265016.1 | hypothetical protein | - |
| LEUCM_RS07985 (LACBS_01584) | - | 1603413..1603907 (+) | 495 | WP_011374541.1 | universal stress protein | - |
| LEUCM_RS07990 (LACBS_01585) | - | 1603949..1604803 (-) | 855 | WP_025015819.1 | helix-turn-helix transcriptional regulator | - |
| LEUCM_RS07995 (LACBS_01586) | - | 1604943..1605593 (-) | 651 | WP_016265014.1 | HAD family phosphatase | - |
| LEUCM_RS08000 (LACBS_01587) | - | 1605620..1606594 (-) | 975 | WP_016265013.1 | DUF2785 domain-containing protein | - |
| LEUCM_RS08005 (LACBS_01588) | - | 1606922..1607524 (+) | 603 | Protein_1542 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 426 a.a. Molecular weight: 46634.27 Da Isoelectric Point: 6.8680
>NTDB_id=57700 LEUCM_RS07975 WP_011374543.1 1601480..1602760(+) (rarA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
Nucleotide
Download Length: 1281 bp
>NTDB_id=57700 LEUCM_RS07975 WP_011374543.1 1601480..1602760(+) (rarA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGTGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGTGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
66.427 |
97.887 |
0.65 |