Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KPL75_RS08665 Genome accession   NZ_CP076653
Coordinates   1639174..1641510 (-) Length   778 a.a.
NCBI ID   WP_219920367.1    Uniprot ID   -
Organism   Bacillus sp. NP247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1634174..1646510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS08640 (KPL75_08635) - 1636834..1637178 (+) 345 WP_219920365.1 PH domain-containing protein -
  KPL75_RS08645 (KPL75_08640) - 1637217..1638284 (-) 1068 WP_219920366.1 AI-2E family transporter -
  KPL75_RS08650 (KPL75_08645) - 1638461..1638673 (+) 213 WP_002122697.1 hypothetical protein -
  KPL75_RS08655 (KPL75_08650) - 1638711..1638839 (-) 129 WP_002015286.1 YrzQ family protein -
  KPL75_RS08660 (KPL75_08655) - 1638858..1639046 (-) 189 WP_002015288.1 hypothetical protein -
  KPL75_RS08665 (KPL75_08660) recD2 1639174..1641510 (-) 2337 WP_219920367.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KPL75_RS08670 (KPL75_08665) - 1641618..1642277 (-) 660 WP_219920368.1 tetratricopeptide repeat protein -
  KPL75_RS08675 (KPL75_08670) mnmA 1642388..1643503 (-) 1116 WP_002160392.1 tRNA 2-thiouridine(34) synthase MnmA -
  KPL75_RS08680 (KPL75_08675) - 1643520..1644665 (-) 1146 WP_219920369.1 cysteine desulfurase family protein -
  KPL75_RS08685 (KPL75_08680) cymR 1644701..1645117 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87239.83 Da        Isoelectric Point: 5.2670

>NTDB_id=576988 KPL75_RS08665 WP_219920367.1 1639174..1641510(-) (recD2) [Bacillus sp. NP247]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQLVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=576988 KPL75_RS08665 WP_219920367.1 1639174..1641510(-) (recD2) [Bacillus sp. NP247]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCAAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTTGATCATCTAGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCCGATGCGTTAAATGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTA
GAGAAAGTGATGAGTTTTTTAAATGGCTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGACGGAATTGGGTTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCATGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATAATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCGGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTTCACGGAGTATCCTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACAGGGCTTCCGGCGTGCACAATTCATCGTCT
GCTCGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTTGACATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTGAATGCAGGTGCGGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAACTTGCCCATGCGATAAAAGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTACAGGAGCCCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCCAAGACAAAAGGATTTAGTGCAAGAGATGTACAAGTATTAGCGCCGATGTACCGTGGGCCTGCTGGTATTAA
TGTGCTGAATGAAGCATTGCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGCAGAGGTGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACCTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTAAATCGTCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGTCGATTGCAAGAATCACAAGGCGAAGTGCAGTTGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578