Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KPL75_RS05695 Genome accession   NZ_CP076653
Coordinates   1104856..1105635 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus sp. NP247     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099856..1110635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS05670 (KPL75_05665) uppS 1100619..1101395 (-) 777 WP_002111371.1 isoprenyl transferase -
  KPL75_RS05675 (KPL75_05670) frr 1101481..1102038 (-) 558 WP_000531506.1 ribosome recycling factor -
  KPL75_RS05680 (KPL75_05675) pyrH 1102042..1102764 (-) 723 WP_002111372.1 UMP kinase -
  KPL75_RS05685 (KPL75_05680) tsf 1102831..1103718 (-) 888 WP_002088177.1 translation elongation factor Ts -
  KPL75_RS05690 (KPL75_05685) rpsB 1103801..1104502 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  KPL75_RS05695 (KPL75_05690) codY 1104856..1105635 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KPL75_RS05700 (KPL75_05695) hslU 1105713..1107104 (-) 1392 WP_219919726.1 ATP-dependent protease ATPase subunit HslU -
  KPL75_RS05705 (KPL75_05700) hslV 1107127..1107669 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  KPL75_RS05710 (KPL75_05705) xerC 1107712..1108611 (-) 900 WP_219921072.1 tyrosine recombinase XerC -
  KPL75_RS05715 (KPL75_05710) trmFO 1108683..1109987 (-) 1305 WP_219919727.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=576980 KPL75_RS05695 WP_002014541.1 1104856..1105635(-) (codY) [Bacillus sp. NP247]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=576980 KPL75_RS05695 WP_002014541.1 1104856..1105635(-) (codY) [Bacillus sp. NP247]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCATATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAATCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456